RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PTPN22Q9Y2R2 807 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 ASNSP08243 561 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 SOX10P56693 466 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 FMO1Q01740 532 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 SEL1L2Q5TEA6 688 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 VTI1AQ96AJ9 217 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 RPS6KC1Q96S38 1066 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 PAGR1Q9BTK6 254 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 PNMA2Q9UL42 364 aa19.31■□□□□ 0.68
VIM-206ENST00000487938 SPOPO43791 374 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 CTNNA2P26232 953 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 CHRNA3P32297 505 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 KCNJ1P48048 391 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 MFAP3P55082 362 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 MKRN4PQ13434 485 aaPredicted RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 SLC29A2Q14542 456 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 NBPF9Q3BBW0 867 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 CHADLQ6NUI6 762 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 NIPA1Q7RTP0 329 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 MCF2L2Q86YR7 1114 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 ZNF564Q8TBZ8 553 aaPredicted RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 PABPC3Q9H361 631 aaKnown RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 DDX20Q9UHI6 824 aaKnown RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 GZMAP12544 262 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 NCKAP1LP55160 1127 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 EIF3BP55884 814 aaKnown RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 RPS6P62753 249 aaKnown RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 EN1Q05925 392 aaPredicted RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 TCEAL1Q15170 157 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 CLUL1Q15846 466 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 DHX38Q92620 1227 aaKnown RBP19.3■□□□□ 0.68
VIM-206ENST00000487938 ZNF653Q96CK0 615 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 WNT8AQ9H1J5 351 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 SEMA4AQ9H3S1 761 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 EFCC1Q9HA90 598 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 TBC1D22BQ9NU19 505 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 TBX20Q9UMR3 447 aa19.3■□□□□ 0.68
VIM-206ENST00000487938 LOXHD1Q8IVV2 1947 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 SRRM3A6NNA2 597 aaPredicted RBP19.29■□□□□ 0.68
VIM-206ENST00000487938 CCNE2O96020 404 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 CYP11B1P15538 503 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 CNGA1P29973 690 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 DRG2P55039 364 aaKnown RBP19.29■□□□□ 0.68
VIM-206ENST00000487938 PGM5Q15124 567 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 DENND2CQ68D51 928 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 CCDC105Q8IYK2 499 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 TMEM174Q8WUU8 243 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 CD101Q93033 1021 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 TATDN2Q93075 761 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 TLCD1Q96CP7 247 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 FAM84AQ96KN4 292 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 PCYOX1Q9UHG3 505 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 TCEAL9Q9UHQ7 104 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 RGPD3A6NKT7 1758 aaPredicted RBP19.29■□□□□ 0.68
VIM-206ENST00000487938 RGPD4Q7Z3J3 1758 aa19.29■□□□□ 0.68
VIM-206ENST00000487938 ATXN2Q99700 1313 aaKnown RBP19.29■□□□□ 0.68
VIM-206ENST00000487938 TESPA1A2RU30 521 aaPredicted RBP19.28■□□□□ 0.68
VIM-206ENST00000487938 PHF20L1A8MW92 1017 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 LYPLA2O95372 231 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 KRT39Q6A163 491 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 C4orf19Q8IY42 314 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 HELQQ8TDG4 1101 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 TAS1R2Q8TE23 839 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 PARD3BQ8TEW8 1205 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 SHC3Q92529 594 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 CAMKK2Q96RR4 588 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 ST6GALNAC4Q9H4F1 302 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.28■□□□□ 0.68
VIM-206ENST00000487938 MAPK13O15264 365 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 RARAP10276 462 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 NPTX2P47972 431 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 FNTAP49354 379 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 PSMC5P62195 406 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 C6orf89Q6UWU4 347 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 TMEM161BQ8NDZ6 487 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 PGAP2Q9UHJ9 254 aa19.28■□□□□ 0.68
VIM-206ENST00000487938 DENND3A2RUS2 1198 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 H0YHG0 523 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 PODXLO00592 558 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 CYP1A2P05177 515 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 HSPA6P17066 643 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 COILP38432 576 aaPredicted RBP19.27■□□□□ 0.68
VIM-206ENST00000487938 SPDYCQ5MJ68 293 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 PHLDB2Q86SQ0 1253 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 SLC13A5Q86YT5 568 aaPredicted RBP19.27■□□□□ 0.68
VIM-206ENST00000487938 PI4K2AQ9BTU6 479 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 AZI2Q9H6S1 392 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 PCDHA3Q9Y5H8 950 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 MTA2O94776 668 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 NUDT17P0C025 328 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 DLATP10515 647 aaKnown RBP19.27■□□□□ 0.68
VIM-206ENST00000487938 FGFR4P22455 802 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 IFI35P80217 286 aaPredicted RBP19.27■□□□□ 0.68
VIM-206ENST00000487938 ANO5Q75V66 913 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 YTHDF3Q7Z739 585 aaKnown RBP19.27■□□□□ 0.68
VIM-206ENST00000487938 HOOK3Q86VS8 718 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 TTLL6Q8N841 843 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 BSNDQ8WZ55 320 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 IWS1Q96ST2 819 aa19.27■□□□□ 0.68
VIM-206ENST00000487938 RMDN3Q96TC7 470 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms