RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ZNF662Q6ZS27 426 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 GPRIN1Q7Z2K8 1008 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 MRGPREQ86SM8 312 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 SYT12Q8IV01 421 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 ZNF276Q8N554 614 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 REPS2Q8NFH8 660 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 FBXO18Q8NFZ0 1043 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 CPT1CQ8TCG5 803 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 COG1Q8WTW3 980 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 SNX33Q8WV41 574 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 LMBR1Q8WVP7 490 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 RSAD2Q8WXG1 361 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 MLST8Q9BVC4 326 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 QRSL1Q9H0R6 528 aaKnown RBP4.59□□□□□ -1.67
VPS50-216ENST00000484954 SLKQ9H2G2 1235 aaPredicted RBP4.59□□□□□ -1.67
VPS50-216ENST00000484954 NRDE2Q9H7Z3 1164 aa4.59□□□□□ -1.67
VPS50-216ENST00000484954 GOLGA8AA7E2F4 631 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 ULK1O75385 1050 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 SCAF4O95104 1147 aaKnown RBP4.58□□□□□ -1.68
VPS50-216ENST00000484954 GYPEP15421 78 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 MAKP20794 623 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 APOBEC3AP31941 199 aaPredicted RBP4.58□□□□□ -1.68
VPS50-216ENST00000484954 APBA1Q02410 837 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 VPS72Q15906 364 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 C19orf54Q5BKX5 351 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 MFSD14BQ5SR56 506 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 PRAMEF14Q5SWL7 426 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 PCSK4Q6UW60 755 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 BTNL9Q6UXG8 535 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 RHOUQ7L0Q8 258 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 RPUSD2Q8IZ73 545 aaKnown RBP4.58□□□□□ -1.68
VPS50-216ENST00000484954 GLB1L3Q8NCI6 653 aaPredicted RBP4.58□□□□□ -1.68
VPS50-216ENST00000484954 RNF169Q8NCN4 708 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 SLC25A43Q8WUT9 341 aaPredicted RBP4.58□□□□□ -1.68
VPS50-216ENST00000484954 TEX101Q9BY14 249 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 DMRT3Q9NQL9 472 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 C14orf119Q9NWQ9 140 aa4.58□□□□□ -1.68
VPS50-216ENST00000484954 PRKD3O94806 890 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 PEX11BO96011 259 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 VIL1P09327 827 aaKnown RBP4.57□□□□□ -1.68
VPS50-216ENST00000484954 ADSLP30566 484 aaPredicted RBP4.57□□□□□ -1.68
VPS50-216ENST00000484954 SRSF2Q01130 221 aaKnown RBP4.57□□□□□ -1.68
VPS50-216ENST00000484954 MEF2AQ02078 507 aaPredicted RBP4.57□□□□□ -1.68
VPS50-216ENST00000484954 TAF7LQ5H9L4 462 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 CT47A1Q5JQC4 288 aaPredicted RBP4.57□□□□□ -1.68
VPS50-216ENST00000484954 TOR2AQ5JU69 321 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 IQSEC1Q6DN90 963 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 Q6ZVL8 140 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 DOK3Q7L591 496 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 KCNK18Q7Z418 384 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 FAM83AQ86UY5 434 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 VRK3Q8IV63 474 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 SLC35B2Q8TB61 432 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 ACAP3Q96P50 834 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 ORAI2Q96SN7 254 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 PDCD2LQ9BRP1 358 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 KCNH6Q9H252 994 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 SPON1Q9HCB6 807 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 GPRC5DQ9NZD1 345 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 DMRT1Q9Y5R6 373 aa4.57□□□□□ -1.68
VPS50-216ENST00000484954 BRINP1O60477 761 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 LPXNO60711 386 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 IGSF3O75054 1194 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 GPR3P46089 330 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 RGS19P49795 217 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 KRTAP10-9P60411 292 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 ADRM1Q16186 407 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 MUM1Q2TAK8 710 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 MST1LQ2TV78 715 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 MRGPRGQ86SM5 289 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 ZNF480Q8WV37 535 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 RIN2Q8WYP3 895 aaPredicted RBP4.56□□□□□ -1.68
VPS50-216ENST00000484954 RAX2Q96IS3 184 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 CDC5LQ99459 802 aaKnown RBP4.56□□□□□ -1.68
VPS50-216ENST00000484954 NEU1Q99519 415 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 NDC1Q9BTX1 674 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 EIF2B4Q9UI10 523 aaKnown RBP4.56□□□□□ -1.68
VPS50-216ENST00000484954 SCOCQ9UIL1 159 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 HDAC5Q9UQL6 1122 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 CHST2Q9Y4C5 530 aa4.56□□□□□ -1.68
VPS50-216ENST00000484954 RPTORQ8N122 1335 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 ZNF185O15231 689 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 GPR39O43194 453 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 AKR1B10O60218 316 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 CNGA1P29973 690 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 RNASE9P60153 205 aaKnown RBP4.55□□□□□ -1.68
VPS50-216ENST00000484954 MRPS9P82933 396 aaKnown RBP4.55□□□□□ -1.68
VPS50-216ENST00000484954 PPP3CAQ08209 521 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 METTL24Q5JXM2 366 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 EGFLAMQ63HQ2 1017 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 KRT26Q7Z3Y9 468 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 TRMT2AQ8IZ69 625 aaKnown RBP4.55□□□□□ -1.68
VPS50-216ENST00000484954 OR10H5Q8NGA6 315 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 AUTS2Q8WXX7 1259 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 HAS1Q92839 578 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 LENG9Q96B70 501 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 IFT122Q9HBG6 1241 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 CCM2LQ9NUG4 571 aaPredicted RBP4.55□□□□□ -1.68
VPS50-216ENST00000484954 TRPM5Q9NZQ8 1165 aa4.55□□□□□ -1.68
VPS50-216ENST00000484954 HS3ST4Q9Y661 456 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms