RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	FAM207A	Q9NSI2	230 aa	Predicted RBP	12.21	□□□□□ -0.46
APTX-223	ENST00000479656	TNFSF13B	Q9Y275	285 aa		12.21	□□□□□ -0.46
APTX-223	ENST00000479656	SCN10A	Q9Y5Y9	1956 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	MOXD2P	A6NHM9	499 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	ARF4	P18085	180 aa	Predicted RBP	12.2	□□□□□ -0.46
APTX-223	ENST00000479656	TRIM21	P19474	475 aa	Known RBP	12.2	□□□□□ -0.46
APTX-223	ENST00000479656	SLC9A1	P19634	815 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	PROZ	P22891	400 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	FMO5	P49326	533 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	MCL1	Q07820	350 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	CYP24A1	Q07973	514 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	PPP3CA	Q08209	521 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	CBWD6	Q4V339	395 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	CBWD3	Q5JTY5	395 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	CBWD5	Q5RIA9	395 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	TAF2	Q6P1X5	1199 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	MPZL3	Q6UWV2	235 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	SESTD1	Q86VW0	696 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	ARRDC4	Q8NCT1	418 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	PARD3B	Q8TEW8	1205 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	GLT1D1	Q96MS3	346 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	NUP58	Q9BVL2	599 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	AGPAT5	Q9NUQ2	364 aa		12.2	□□□□□ -0.46
APTX-223	ENST00000479656	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.2	□□□□□ -0.46
APTX-223	ENST00000479656	EPHB6	O15197	1021 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	TSPAN1	O60635	241 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	ERLIN2	O94905	339 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	TPM1	P09493	284 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	DARS	P14868	501 aa	Known RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	EIF4B	P23588	611 aa	Known RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	TNFSF9	P41273	254 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	GCLM	P48507	274 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	MCCD1	P59942	119 aa	Predicted RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	APBA1	Q02410	837 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	TRIM14	Q14142	442 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	PTGIS	Q16647	500 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	ZNF568	Q3ZCX4	644 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	THNSL1	Q8IYQ7	743 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	TMC2	Q8TDI7	906 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	TMEM40	Q8WWA1	233 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	WNT8B	Q93098	351 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	PRIMPOL	Q96LW4	560 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	DEFB118	Q96PH6	123 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	LSM14B	Q9BX40	385 aa	Known RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	TTYH3	Q9C0H2	523 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	CAPN11	Q9UMQ6	739 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	LRRIQ3	A6PVS8	624 aa	Predicted RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	OGT	O15294	1046 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	FAM189A1	O60320	539 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	MFAP3L	O75121	409 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	DLAT	P10515	647 aa	Known RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	ACTN1	P12814	892 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	CCL5	P13501	91 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	PON1	P27169	355 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	KRT9	P35527	623 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	CRYBB1	P53674	252 aa	Predicted RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	WNT7B	P56706	349 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	SNX17	Q15036	470 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	EXOC3L4	Q17RC7	722 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	GBP6	Q6ZN66	633 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	CATSPER4	Q7RTX7	472 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	SERINC5	Q86VE9	423 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	NEK11	Q8NG66	645 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	CELF4	Q9BZC1	486 aa	Known RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	RNF208	Q9H0X6	261 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	CDT1	Q9H211	546 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	PDZD7	Q9H5P4	517 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	RBAK	Q9NYW8	714 aa	Predicted RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	ZKSCAN5	Q9Y2L8	839 aa		12.19	□□□□□ -0.46
APTX-223	ENST00000479656	LUC7L2	Q9Y383	392 aa	Known RBP	12.19	□□□□□ -0.46
APTX-223	ENST00000479656	CNTNAP2	Q9UHC6	1331 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656		A0A1W2PQ45	241 aa	Predicted RBP	12.18	□□□□□ -0.46
APTX-223	ENST00000479656		A0A1W2PQY0	241 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	NOL4	O94818	638 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	HSPA8	P11142	646 aa	Known RBP	12.18	□□□□□ -0.46
APTX-223	ENST00000479656	SKIL	P12757	684 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	OSTN	P61366	133 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	CCZ1B	P86790	482 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	CCZ1	P86791	482 aa	Predicted RBP	12.18	□□□□□ -0.46
APTX-223	ENST00000479656	NOLC1	Q14978	699 aa	Known RBP eCLIP	12.18	□□□□□ -0.46
APTX-223	ENST00000479656	PSMD6	Q15008	389 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	FIGN	Q5HY92	759 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	DPY19L2P1	Q6NXN4	242 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	RSPH3	Q86UC2	560 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	CNGA4	Q8IV77	575 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	CEP120	Q8N960	986 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	TMX1	Q9H3N1	280 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	PDE11A	Q9HCR9	933 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	PAK6	Q9NQU5	681 aa	Predicted RBP	12.18	□□□□□ -0.46
APTX-223	ENST00000479656	STARD7	Q9NQZ5	370 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656	TOPORS	Q9NS56	1045 aa	Predicted RBP	12.18	□□□□□ -0.46
APTX-223	ENST00000479656	TRMT13	Q9NUP7	481 aa	Known RBP	12.18	□□□□□ -0.46
APTX-223	ENST00000479656	PYCARD	Q9ULZ3	195 aa		12.18	□□□□□ -0.46
APTX-223	ENST00000479656		A0A1B0GUA9	196 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	GTPBP10	A4D1E9	387 aa	Known RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	KBTBD13	C9JR72	458 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	HOXA11	P31270	313 aa	Predicted RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	MRPS6	P82932	125 aa	Known RBP	12.17	□□□□□ -0.46
APTX-223	ENST00000479656	MYL7	Q01449	175 aa		12.17	□□□□□ -0.46
APTX-223	ENST00000479656	PTPN11	Q06124	597 aa	Predicted RBP	12.17	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms