RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SLC39A4Q6P5W5 647 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 RDH13Q8NBN7 331 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 AFAP1L1Q8TED9 768 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 BSNDQ8WZ55 320 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 CEP170P1Q96L14 293 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 RPS6KC1Q96S38 1066 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 EPB41L5Q9HCM4 733 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 ARHGAP44Q17R89 818 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 C15orf39Q6ZRI6 1047 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 EPS8L1Q8TE68 723 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 CASKIN2Q8WXE0 1202 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 DHX38Q92620 1227 aaKnown RBP13.18□□□□□ -0.3
PTPRF-212ENST00000477970 XPNPEP1Q9NQW7 623 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 CYP26B1Q9NR63 512 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 CALCOCO1Q9P1Z2 691 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 MAFBQ9Y5Q3 323 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-212ENST00000477970 IGKV6D-21A0A0A0MT36 114 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 TMEM150BA6NC51 233 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 CEP104O60308 925 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 SHOX2O60902 331 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-212ENST00000477970 HSPA9P38646 679 aaKnown RBP13.18□□□□□ -0.3
PTPRF-212ENST00000477970 ACTR2P61160 394 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 GUCY2DQ02846 1103 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 PPFIA1Q13136 1202 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 CST9Q5W186 159 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 GPD1LQ8N335 351 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 HELQQ8TDG4 1101 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 THAP2Q9H0W7 228 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 FAM204AQ9H8W3 233 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 ZNFX1Q9P2E3 1918 aaKnown RBP13.18□□□□□ -0.3
PTPRF-212ENST00000477970 HSF2BPO75031 334 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 GPC5P78333 572 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 GCNT1Q02742 428 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 CBWD2Q8IUF1 395 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 SULF1Q8IWU6 871 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 IQCKQ8N0W5 287 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 ARHGEF26Q96DR7 871 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 OSGEPQ9NPF4 335 aa13.18□□□□□ -0.3
PTPRF-212ENST00000477970 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.18□□□□□ -0.3
PTPRF-212ENST00000477970 MYH9P35579 1960 aaKnown RBP13.17□□□□□ -0.3
PTPRF-212ENST00000477970 UNCXA6NJT0 531 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 CCDC169A6NNP5 214 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 A6NNZ2 444 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 CHRNB2P17787 502 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 ACTN2P35609 894 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 CARSP49589 748 aaKnown RBP13.17□□□□□ -0.3
PTPRF-212ENST00000477970 POU5F1Q01860 360 aaKnown RBP13.17□□□□□ -0.3
PTPRF-212ENST00000477970 PRKCEQ02156 737 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 TUBB8Q3ZCM7 444 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 SPDYCQ5MJ68 293 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 EMC10Q5UCC4 262 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 FBXL13Q8NEE6 735 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 KREMEN1Q96MU8 473 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 NIFKQ9BYG3 293 aaKnown RBP13.17□□□□□ -0.3
PTPRF-212ENST00000477970 FBXO40Q9UH90 709 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 GGPS1O95749 300 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 MAATS1Q7Z4T9 603 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 CCDC60Q8IWA6 550 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-212ENST00000477970 EFCAB13Q8IY85 973 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 ZSWIM2Q8NEG5 633 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 CCDC26Q8TAB7 109 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 IFT74Q96LB3 600 aa13.17□□□□□ -0.3
PTPRF-212ENST00000477970 CYP1A2P05177 515 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 ECHS1P30084 290 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 STXBP2Q15833 593 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 SWSAP1Q6NVH7 229 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 LRIG3Q6UXM1 1119 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 LBX2Q6XYB7 198 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 RPUSD2Q8IZ73 545 aaKnown RBP13.16□□□□□ -0.3
PTPRF-212ENST00000477970 TSEN2Q8NCE0 465 aaKnown RBP13.16□□□□□ -0.3
PTPRF-212ENST00000477970 SLC20A1Q8WUM9 679 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 CDCA5Q96FF9 252 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 TAS2R14Q9NYV8 317 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 COG5Q9UP83 839 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 ADGRA3Q8IWK6 1321 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 TMCO5BA8MYB1 307 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 LRRN2O75325 713 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 EDNRBP24530 442 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 GYS2P54840 703 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 TAS1R3Q7RTX0 852 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 PALB2Q86YC2 1186 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 SEMA4DQ92854 862 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 NT5C1BQ96P26 610 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 RAB20Q9NX57 234 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 NFU1Q9UMS0 254 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 SYNGAP1Q96PV0 1343 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 KRIT1O00522 736 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 SART1O43290 800 aaKnown RBP13.16□□□□□ -0.3
PTPRF-212ENST00000477970 EXTL3O43909 919 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 PTENP60484 403 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 CDR2Q01850 454 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 PSMD6Q15008 389 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 NOP9Q86U38 636 aaKnown RBP13.16□□□□□ -0.3
PTPRF-212ENST00000477970 ZNF677Q86XU0 584 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 CEP89Q96ST8 783 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 DHX33Q9H6R0 707 aaKnown RBP13.16□□□□□ -0.3
PTPRF-212ENST00000477970 UVRAGQ9P2Y5 699 aa13.16□□□□□ -0.3
PTPRF-212ENST00000477970 ZHX1Q9UKY1 873 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms