RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 RUSC1Q9BVN2 902 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 ZMYM2Q9UBW7 1377 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 ACKR2O00590 384 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 PTGESO14684 152 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 SSBP05455 408 aaKnown RBP eCLIP15.58■□□□□ 0.08
UPF3A-204ENST00000475218 PRKCBP05771 671 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 WEE2P0C1S8 567 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 CA8P35219 290 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 OR1G1P47890 313 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 NAB2Q15742 525 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 RILPL1Q5EBL4 403 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 TAS1R3Q7RTX0 852 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 ZBTB8OSQ8IWT0 167 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 LRRC15Q8TF66 581 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 RPGRIP1Q96KN7 1286 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 KLHL5Q96PQ7 755 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 FAM193BQ96PV7 902 aaPredicted RBP15.58■□□□□ 0.08
UPF3A-204ENST00000475218 PAAF1Q9BRP4 392 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 TRIM6Q9C030 488 aaPredicted RBP15.58■□□□□ 0.08
UPF3A-204ENST00000475218 ADAM7Q9H2U9 754 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 POMKQ9H5K3 350 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 DENND4AQ7Z401 1863 aa15.58■□□□□ 0.08
UPF3A-204ENST00000475218 PRR33A8MZF0 331 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 SOD2P04179 222 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 PRPF4BQ13523 1007 aaKnown RBP15.57■□□□□ 0.08
UPF3A-204ENST00000475218 HYIQ5T013 277 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 DTHD1Q6ZMT9 781 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 DEPTORQ8TB45 409 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 HERC2P3Q9BVR0 1158 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 GPR62Q9BZJ7 368 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 C2orf40Q9H1Z8 148 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 C2orf16Q68DN1 1984 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 SRGAP2BP0DMP2 458 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 MCM2P49736 904 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 CLCN4P51793 760 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 CUL4AQ13619 759 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 GIT2Q14161 759 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 MAPK6Q16659 721 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 KIAA0319Q5VV43 1072 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 RINT1Q6NUQ1 792 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 C1orf186Q6ZWK4 172 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 KIFAP3Q92845 792 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 B3GALT6Q96L58 329 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 UPF2Q9HAU5 1272 aaKnown RBP15.57■□□□□ 0.08
UPF3A-204ENST00000475218 CHST7Q9NS84 486 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 SNTG2Q9NY99 539 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 KIF3AQ9Y496 699 aa15.57■□□□□ 0.08
UPF3A-204ENST00000475218 N4BP3O15049 544 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 HIP1RO75146 1068 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 RECQL4O94761 1208 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 SP100P23497 879 aaPredicted RBP15.56■□□□□ 0.08
UPF3A-204ENST00000475218 IGFBP6P24592 240 aaPredicted RBP15.56■□□□□ 0.08
UPF3A-204ENST00000475218 NPTX2P47972 431 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 GRIK3Q13003 919 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 RARS2Q5T160 578 aaKnown RBP15.56■□□□□ 0.08
UPF3A-204ENST00000475218 KRT79Q5XKE5 535 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 RPS6KC1Q96S38 1066 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 PARP2Q9UGN5 583 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 DNM3Q9UQ16 869 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 SMC3Q9UQE7 1217 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 TRIP11Q15643 1979 aa15.56■□□□□ 0.08
UPF3A-204ENST00000475218 C2CD2LO14523 706 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 LIG1P18858 919 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 ITIH3Q06033 890 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 PPP2R5AQ15172 486 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 TPRNQ4KMQ1 711 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 HFE2Q6ZVN8 426 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 EDAQ92838 391 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 RAB34Q9BZG1 259 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 RXFP1Q9HBX9 757 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 ARHGAP28Q9P2N2 729 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 ZNF318Q5VUA4 2279 aa15.55■□□□□ 0.08
UPF3A-204ENST00000475218 VWA3AA6NCI4 1184 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 H3BQV1 296 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 ABLIM1O14639 778 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 TEX28O15482 410 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 EFNA5P52803 228 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 PEX3P56589 373 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 DSG1Q02413 1049 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 GRIN1Q05586 938 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 HACE1Q8IYU2 909 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 CEP120Q8N960 986 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 FBXL18Q96ME1 805 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 PTPRHQ9HD43 1115 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 MRPL17Q9NRX2 175 aaKnown RBP15.54■□□□□ 0.08
UPF3A-204ENST00000475218 DZANK1Q9NVP4 752 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 STK39Q9UEW8 545 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 STK24Q9Y6E0 443 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 VWA8A3KMH1 1905 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 MEFVO15553 781 aaPredicted RBP15.54■□□□□ 0.08
UPF3A-204ENST00000475218 GLUD2P49448 558 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 SLC12A3P55017 1021 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 BMS1Q14692 1282 aaKnown RBP15.54■□□□□ 0.08
UPF3A-204ENST00000475218 TMEM119Q4V9L6 283 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 ATF7IP2Q5U623 682 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 LARP1BQ659C4 914 aaKnown RBP15.54■□□□□ 0.08
UPF3A-204ENST00000475218 KIAA1841Q6NSI8 718 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 TMC5Q6UXY8 1006 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 IFT74Q96LB3 600 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 PLIN2Q99541 437 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms