RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	CCDC89	Q8N998	374 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ZSWIM2	Q8NEG5	633 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	LRRC8C	Q8TDW0	803 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	LRRN4	Q8WUT4	740 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	NSMCE1	Q8WV22	266 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ALG3	Q92685	438 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ZBTB10	Q96DT7	871 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	TMEM237	Q96Q45	408 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	SH3GL3	Q99963	347 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	KMT5A	Q9NQR1	393 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	GINM1	Q9NU53	330 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ATRN	O75882	1429 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	DENND3	A2RUS2	1198 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	HSPA1L	P34931	641 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	NOP14	P78316	857 aa	Known RBP	11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	SLC35C1	Q96A29	364 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	MAD1L1	Q9Y6D9	718 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	IGSF9B	Q9UPX0	1349 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	GPR75-ASB3	A0A0A6YYF3	556 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	TARS	P26639	723 aa	Known RBP	11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ALDH3A1	P30838	453 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ARSH	Q5FYA8	562 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ANKRD20A3	Q5VUR7	823 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	FAM228A	Q86W67	206 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	SLC5A5	Q92911	643 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	MTMR9	Q96QG7	549 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	ZNF341	Q9BYN7	854 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	SHCBP1L	Q9BZQ2	653 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	GDF3	Q9NR23	364 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	APEX2	Q9UBZ4	518 aa		11.44	□□□□□ -0.58
CHD3-208	ENST00000470531	COL5A2	P05997	1499 aa	Predicted RBP	11.44	□□□□□ -0.58
CHD3-208	ENST00000470531		A8MUI8	341 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	SRGAP2C	P0DJJ0	459 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	PLS3	P13797	630 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	RPL21	P46778	160 aa	Known RBP	11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	TFAM	Q00059	246 aa	Known RBP	11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	RASA3	Q14644	834 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	PSMD6	Q15008	389 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	NLRX1	Q86UT6	975 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	ZBED8	Q8IZ13	594 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	AGR3	Q8TD06	166 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	STMN2	Q93045	179 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	INPP4A	Q96PE3	977 aa	Predicted RBP	11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	RMI1	Q9H9A7	625 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	METTL5	Q9NRN9	209 aa	Known RBP	11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	MCM8	Q9UJA3	840 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	PRR12	Q9ULL5	1215 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	LAMB4	A4D0S4	1761 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	CFAP69	A5D8W1	941 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531		F8VZ95	297 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	CSDE1	O75534	798 aa	Known RBP	11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	KCNJ2	P63252	427 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	HAUS6	Q7Z4H7	955 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	TMC3	Q7Z5M5	1100 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	ARHGEF19	Q8IW93	802 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	PNMA3	Q9UL41	463 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	SPEF2	Q9C093	1822 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	SLIT3	O75094	1523 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	BCL9	O00512	1426 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	ARHGAP42	A6NI28	874 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	GH1	P01241	217 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	NUMB	P49757	651 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	GPS1	Q13098	491 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	UBAP2	Q5T6F2	1119 aa	Known RBP	11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	FRMD5	Q7Z6J6	570 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	XXYLT1	Q8NBI6	393 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	MAML1	Q92585	1016 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	ERP27	Q96DN0	273 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	WDR11	Q9BZH6	1224 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	NOD2	Q9HC29	1040 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	AGPAT3	Q9NRZ7	376 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	TJP1	Q07157	1748 aa		11.43	□□□□□ -0.58
CHD3-208	ENST00000470531	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	RASSF9	O75901	435 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	KRT1	P04264	644 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ZSCAN5DP	P0CG00	497 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	MFAP3	P55082	362 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	DMP1	Q13316	513 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	TRPC3	Q13507	836 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ANKRD20A8P	Q5CZ79	823 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	C6orf118	Q5T5N4	469 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	PPP4R3A	Q6IN85	833 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	TRPM8	Q7Z2W7	1104 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	MIEF2	Q96C03	454 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	C12orf65	Q9H3J6	166 aa	Known RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	PICK1	Q9NRD5	415 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	SAE1	Q9UBE0	346 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	PCNT	O95613	3336 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	CCT8L1P	A6NM43	557 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	PDXK	O00764	312 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	BBOX1	O75936	387 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	APBA3	O96018	575 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ITGA8	P53708	1063 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ATXN3	P54252	364 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	POLE2	P56282	527 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	TTLL12	Q14166	644 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	PREPL	Q4J6C6	727 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	KCNT1	Q5JUK3	1230 aa		11.42	□□□□□ -0.58

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