RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 B4DLN1 442 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 ADCY3O60266 1144 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 GAS7O60861 476 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 FARP2O94887 1054 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 HSPA1AP0DMV8 641 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 HSPA1BP0DMV9 641 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 TXNP10599 105 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 TGFB3P10600 412 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CYBAP13498 195 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 PFKFB1P16118 471 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CMA1P23946 247 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 NDUFA8P51970 172 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 LBX1P52954 281 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 UBE2HP62256 183 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CACNB2Q08289 660 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 PPP2R5CQ13362 524 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 SNW1Q13573 536 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 PWP1Q13610 501 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 PDIA5Q14554 519 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CCDC85BQ15834 202 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 HSDL1Q3SXM5 330 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 RESP18Q5W5W9 173 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 SLFN12Q8IYM2 578 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 ENGASEQ8NFI3 743 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 SCFD2Q8WU76 684 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 TP53INP1Q96A56 240 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 RIT2Q99578 217 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 SENP7Q9BQF6 1050 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CLEC4MQ9H2X3 399 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 VTA1Q9NP79 307 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 RGL1Q9NZL6 768 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 WRAP73Q9P2S5 460 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 LRWD1Q9UFC0 647 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 ZHX1Q9UKY1 873 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 SOX13Q9UN79 622 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 HPSEQ9Y251 543 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 PTCH2Q9Y6C5 1203 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 NFASCO94856 1347 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 FAM237AA0A1B0GTK4 181 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 MARCH6O60337 910 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 MED24O75448 989 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 RGS9O75916 674 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 SLITRK3O94933 977 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 GGPS1O95749 300 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 HOXD10P28358 340 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 LONP1P36776 959 aaKnown RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 SP4Q02446 784 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 CYP4A11Q02928 519 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 ARHGAP1Q07960 439 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 KARSQ15046 597 aaKnown RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 DUSP28Q4G0W2 176 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 NAALADL2Q58DX5 795 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 CELF3Q5SZQ8 465 aaKnown RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 MAP3K21Q5TCX8 1036 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 NCAPH2Q6IBW4 605 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 KCNK18Q7Z418 384 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 FMR1NBQ8N0W7 255 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 PDILTQ8N807 584 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 FSIP1Q8NA03 581 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 RAET1EQ8TD07 263 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 MRPS27Q92552 414 aaKnown RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 CDHR1Q96JP9 859 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 PLIN2Q99541 437 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 MPHOSPH6Q99547 160 aaKnown RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 HSD17B14Q9BPX1 270 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 TEKT3Q9BXF9 490 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 MUC3BQ9H195 1237 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 SRA1Q9HD15 236 aaKnown RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 JPH1Q9HDC5 661 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 TBC1D22BQ9NU19 505 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 SLC9A2Q9UBY0 812 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 TRIM33Q9UPN9 1127 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 TCHHQ07283 1943 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 ZNFX1Q9P2E3 1918 aaKnown RBP5.29□□□□□ -1.56
SF3B1-208ENST00000470268 MGAMO43451 1857 aa5.29□□□□□ -1.56
SF3B1-208ENST00000470268 PLXNA1Q9UIW2 1896 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 GSTTP1A0A1W2PQM5 241 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CTAGE5O15320 804 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 XRCC6P12956 609 aaKnown RBP eCLIP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CCND3P30281 292 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ACTR2P61160 394 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 TNFAIP2Q03169 654 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 GRB10Q13322 594 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CTTNQ14247 550 aaKnown RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 NEDD9Q14511 834 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 TTLL4Q14679 1199 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 UGCGQ16739 394 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 TMEM266Q2M3C6 531 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 IQSEC1Q6DN90 963 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 METTL7BQ6UX53 244 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ABHD15Q6UXT9 468 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 VN1R5Q7Z5H4 357 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CABP7Q86V35 215 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CATSPER3Q86XQ3 398 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CCDC60Q8IWA6 550 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 DTWD1Q8N5C7 304 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 SH3TC2Q8TF17 1288 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 DYDC2Q96IM9 177 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 AK8Q96MA6 479 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 PCYT2Q99447 389 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms