RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SEC24CP53992 1094 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 ZNF280AP59817 542 aaPredicted RBP20.57■□□□□ 0.88
VIM-203ENST00000469543 KRT76Q01546 638 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 DHX9Q08211 1270 aaKnown RBP20.57■□□□□ 0.88
VIM-203ENST00000469543 AEBP2Q6ZN18 517 aaPredicted RBP20.57■□□□□ 0.88
VIM-203ENST00000469543 TAS1R3Q7RTX0 852 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 C12orf56Q8IXR9 622 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 ATP8A1Q9Y2Q0 1164 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 SNX24Q9Y343 169 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 EIF3HO15372 352 aaKnown RBP eCLIP20.56■□□□□ 0.88
VIM-203ENST00000469543 JAK3P52333 1124 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 ANGEL2Q5VTE6 544 aaKnown RBP20.56■□□□□ 0.88
VIM-203ENST00000469543 KRT39Q6A163 491 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 CHADLQ6NUI6 762 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 MAP4K3Q8IVH8 894 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 TRPC6Q9Y210 931 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 ACOT2P49753 483 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 ZNF844Q08AG5 666 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 CUL1Q13616 776 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 MTERF2Q49AM1 385 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 SEZ6Q53EL9 994 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 ZNF280CQ8ND82 737 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 ATP8B4Q8TF62 1192 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 ZNF516Q92618 1163 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 TMEM143Q96AN5 459 aa20.56■□□□□ 0.88
VIM-203ENST00000469543 KRT5P13647 590 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 KCNJ1P48048 391 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 DR1Q01658 176 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 SPOPLQ6IQ16 392 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 CCDC26Q8TAB7 109 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 BICD1Q96G01 975 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 CARD9Q9H257 536 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 A1CFQ9NQ94 594 aaKnown RBP20.55■□□□□ 0.88
VIM-203ENST00000469543 RAB20Q9NX57 234 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 UTP11Q9Y3A2 253 aaKnown RBP20.55■□□□□ 0.88
VIM-203ENST00000469543 RTN2O75298 545 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 PLTPP55058 493 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 ALCAMQ13740 583 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 TTC27Q6P3X3 843 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 REPS2Q8NFH8 660 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 SHC3Q92529 594 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 ZBTB45Q96K62 511 aaPredicted RBP20.55■□□□□ 0.88
VIM-203ENST00000469543 ATP6V1G3Q96LB4 118 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 NUP85Q9BW27 656 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 ST6GALNAC4Q9H4F1 302 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 PTPN22Q9Y2R2 807 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 KIAA1217Q5T5P2 1943 aa20.55■□□□□ 0.88
VIM-203ENST00000469543 BHMG1C9JSJ3 638 aaPredicted RBP20.54■□□□□ 0.88
VIM-203ENST00000469543 MYO1FO00160 1098 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 NR1D1P20393 614 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 SFNP31947 248 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 PTENP60484 403 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 FEZ2Q9UHY8 353 aaPredicted RBP20.54■□□□□ 0.88
VIM-203ENST00000469543 CFHP08603 1231 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 CCND2P30279 289 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 PEX5P50542 639 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 ACTR2P61160 394 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 CNTN2Q02246 1040 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 TMC3Q7Z5M5 1100 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 PRELID2Q8N945 189 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 FBXL13Q8NEE6 735 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 SLITRK6Q9H5Y7 841 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 ANKEF1Q9NU02 776 aa20.54■□□□□ 0.88
VIM-203ENST00000469543 GRIN3BO60391 1043 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 PRKCEQ02156 737 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 ZBTB41Q5SVQ8 909 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 RHOT2Q8IXI1 618 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 SCYL3Q8IZE3 742 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 FAM107BQ9H098 131 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 JPH1Q9HDC5 661 aaPredicted RBP20.53■□□□□ 0.88
VIM-203ENST00000469543 CYP39A1Q9NYL5 469 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 P4HA2O15460 535 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 TMOD1P28289 359 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 MFAP3P55082 362 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 UHMK1Q8TAS1 419 aaKnown RBP20.53■□□□□ 0.88
VIM-203ENST00000469543 CPA5Q8WXQ8 436 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 ZNF653Q96CK0 615 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 TMBIM4Q9HC24 238 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 PICK1Q9NRD5 415 aa20.53■□□□□ 0.88
VIM-203ENST00000469543 PTPRJQ12913 1337 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 ATP4AP20648 1035 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 RFX1P22670 979 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 CYP24A1Q07973 514 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 ZNF564Q8TBZ8 553 aaPredicted RBP20.52■□□□□ 0.88
VIM-203ENST00000469543 FBXO25Q8TCJ0 367 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 NSUN6Q8TEA1 469 aaKnown RBP20.52■□□□□ 0.88
VIM-203ENST00000469543 DDX1Q92499 740 aaKnown RBP20.52■□□□□ 0.88
VIM-203ENST00000469543 ZSWIM1Q9BR11 485 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 HAPLN2Q9GZV7 340 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 R3HDMLQ9H3Y0 253 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 CYP26B1Q9NR63 512 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 TTC7AQ9ULT0 858 aaPredicted RBP20.52■□□□□ 0.88
VIM-203ENST00000469543 SHBGP04278 402 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 NTPCRQ9BSD7 190 aaKnown RBP20.52■□□□□ 0.88
VIM-203ENST00000469543 VPS33BQ9H267 617 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 TMEM8AQ9HCN3 771 aa20.52■□□□□ 0.88
VIM-203ENST00000469543 COL11A1P12107 1806 aaPredicted RBP20.52■□□□□ 0.88
VIM-203ENST00000469543 SKOR1P84550 965 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 OTUD6AQ7L8S5 288 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 JAMLQ86YT9 394 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms