RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PBXIP1Q96AQ6 731 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 C2orf40Q9H1Z8 148 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 SFXN1Q9H9B4 322 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 NOL7Q9UMY1 257 aaKnown RBP18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 SSX2IPQ9Y2D8 614 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 ARHGEF35A5YM69 484 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 C2CD4DB7Z1M9 353 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 NR1I2O75469 434 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 WEE2P0C1S8 567 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 CYP11B2P19099 503 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 FXR2P51116 673 aaKnown RBP eCLIP18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 HAUS3Q68CZ6 603 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 KANK3Q6NY19 840 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 C4orf32Q8N8J7 132 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 GSTCDQ8NEC7 633 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 FZD8Q9H461 694 aa18.34■□□□□ 0.53
CCDC28B-204ENST00000469003 DENND4AQ7Z401 1863 aa18.33■□□□□ 0.53
CCDC28B-204ENST00000469003 AKAP5P24588 427 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 U2AF2P26368 475 aaKnown RBP eCLIP18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 GRIK3Q13003 919 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 TMC5Q6UXY8 1006 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 TAS1R1Q7RTX1 841 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 ZBTB33Q86T24 672 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 BSNDQ8WZ55 320 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 RPS6KC1Q96S38 1066 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 COLEC11Q9BWP8 271 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 PARP2Q9UGN5 583 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 ZDBF2Q9HCK1 2354 aa18.33■□□□□ 0.52
CCDC28B-204ENST00000469003 C2CD2LO14523 706 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 N4BP3O15049 544 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 CCT6AP40227 531 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 GLUD2P49448 558 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 DSG1Q02413 1049 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 NBR1Q14596 966 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 KIAA0319Q5VV43 1072 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 GPR149Q86SP6 731 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 ZDHHC14Q8IZN3 488 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 FBXL6Q8N531 539 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 ASIC4Q96FT7 647 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 PHOX2BQ99453 314 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 RXFP1Q9HBX9 757 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 KLK14Q9P0G3 267 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 LRWD1Q9UFC0 647 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 USTQ9Y2C2 406 aa18.32■□□□□ 0.52
CCDC28B-204ENST00000469003 SPDYE4A6NLX3 237 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 F8W810 466 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 ADH1AP07327 375 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 NAMPTP43490 491 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 PRPF4BQ13523 1007 aaKnown RBP18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 PDIA5Q14554 519 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 PPP2R5AQ15172 486 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 ECM1Q16610 540 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 MAPK6Q16659 721 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 SUGP1Q8IWZ8 645 aaKnown RBP18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 TDRD5Q8NAT2 981 aaKnown RBP18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 KREMEN2Q8NCW0 462 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 DEPTORQ8TB45 409 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 CCDC113Q9H0I3 377 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 PDZD7Q9H5P4 517 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 SORCS3Q9UPU3 1222 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 STK24Q9Y6E0 443 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 PLXNA3P51805 1871 aa18.31■□□□□ 0.52
CCDC28B-204ENST00000469003 CFAP54Q96N23 3096 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 TTLL13PA6NNM8 815 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 ACKR2O00590 384 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 TEX28O15482 410 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 PRKCBP05771 671 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 TOB1P50616 345 aaPredicted RBP18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 TMEM132AQ24JP5 1023 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 FUT10Q6P4F1 479 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 C15orf39Q6ZRI6 1047 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 GPR65Q8IYL9 337 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 UBALD2Q8IYN6 164 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 PLCD3Q8N3E9 789 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 IGSF22Q8N9C0 903 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 CMASQ8NFW8 434 aaPredicted RBP18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 FEZF2Q8TBJ5 459 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 RAB34Q9BZG1 259 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 BHMT2Q9H2M3 363 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 MAN1C1Q9NR34 630 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 CHST7Q9NS84 486 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 DAXXQ9UER7 740 aaPredicted RBP18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 DPP7Q9UHL4 492 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 ADAM28Q9UKQ2 775 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 KMT2EQ8IZD2 1858 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 MYO10Q9HD67 2058 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 C2orf16Q68DN1 1984 aa18.3■□□□□ 0.52
CCDC28B-204ENST00000469003 ST18O60284 1047 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 GLUD1P00367 558 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 PTPN5P54829 565 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 PTGDRQ13258 359 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 MTMR3Q13615 1198 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 RABEP1Q15276 862 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 ELMSAN1Q6PJG2 1045 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 CCDC149Q6ZUS6 474 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 KIFAP3Q92845 792 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 IFT74Q96LB3 600 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 ADPGKQ9BRR6 497 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 GPR62Q9BZJ7 368 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms