RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 FGF11Q92914 225 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 NUSAP1Q9BXS6 441 aaKnown RBP6.02□□□□□ -1.45
HMGB1-207ENST00000468384 PCGF6Q9BYE7 350 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 CABP5Q9NP86 173 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 GPRC5CQ9NQ84 441 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 BABAM1Q9NWV8 329 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 GDF2Q9UK05 429 aaPredicted RBP6.02□□□□□ -1.45
HMGB1-207ENST00000468384 ITGB1BP2Q9UKP3 347 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 PALD1Q9ULE6 856 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 PPP1R9AQ9ULJ8 1098 aa6.02□□□□□ -1.45
HMGB1-207ENST00000468384 NRCAMQ92823 1304 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 DCLK1O15075 740 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 CXCL14O95715 111 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 STAG3L1P0CL83 205 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 ITGB6P18564 788 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 OXCT1P55809 520 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 TAGLNQ01995 201 aaKnown RBP6.01□□□□□ -1.45
HMGB1-207ENST00000468384 SEPT2Q15019 361 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 ECM1Q16610 540 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 C2orf27AQ580R0 203 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 PPP1R26Q5T8A7 1209 aaPredicted RBP6.01□□□□□ -1.45
HMGB1-207ENST00000468384 SPNS3Q6ZMD2 512 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 Q6ZS52 159 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 CAPN12Q6ZSI9 719 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 MTSS1LQ765P7 747 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 CYP2U1Q7Z449 544 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 GLRX5Q86SX6 157 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 GLYCTKQ8IVS8 523 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 SPATA5Q8NB90 893 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 SSC4DQ8WTU2 575 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 COPS5Q92905 334 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 TMEM176AQ96HP8 235 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 ALG1Q9BT22 464 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 POLR3GLQ9BT43 218 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 RHOBTB2Q9BYZ6 727 aa6.01□□□□□ -1.45
HMGB1-207ENST00000468384 TYW1Q9NV66 732 aaKnown RBP6.01□□□□□ -1.45
HMGB1-207ENST00000468384 RBM19Q9Y4C8 960 aaKnown RBP6.01□□□□□ -1.45
HMGB1-207ENST00000468384 NUP205Q92621 2012 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 NKRFO15226 690 aaKnown RBP eCLIP6□□□□□ -1.451e-9■□□□□ 9.2
HMGB1-207ENST00000468384 SYNCRIPO60506 623 aaKnown RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 CAND2O75155 1236 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 HOXB7P09629 217 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 PRF1P14222 555 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 TCF3P15923 654 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 LAG3P18627 525 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 MAPK1P28482 360 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 ATXN3P54252 364 aaPredicted RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 NEXNQ0ZGT2 675 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 TESK1Q15569 626 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 CERKLQ49MI3 558 aaPredicted RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 LMBR1LQ6UX01 489 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 CYP26C1Q6V0L0 522 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 ATF7IPQ6VMQ6 1270 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 SPOCD1Q6ZMY3 1216 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 TAOK1Q7L7X3 1001 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 MAMDC2Q7Z304 686 aaPredicted RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 LYSMD3Q7Z3D4 306 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 DDX53Q86TM3 631 aaKnown RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 DHX37Q8IY37 1157 aaKnown RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 LINC01599Q8WXQ3 324 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 FAM3CQ92520 227 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 KAZALD1Q96I82 304 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 LGMNQ99538 433 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 EPN3Q9H201 632 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 FBXO40Q9UH90 709 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 RNF112Q9ULX5 631 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 AK5Q9Y6K8 562 aa6□□□□□ -1.45
HMGB1-207ENST00000468384 ZFP37Q9Y6Q3 630 aaPredicted RBP6□□□□□ -1.45
HMGB1-207ENST00000468384 CCDC195A0A1B0GUA6 201 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 PDE8BO95263 885 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 IFIT1P09914 478 aaKnown RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 RNF224P0DH78 156 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 GHRP10912 638 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 RPL17P18621 184 aaKnown RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 RBMXP38159 391 aaKnown RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 FKBP5Q13451 457 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 NAA30Q147X3 362 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 NCAPHQ15003 741 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 PPP2R5BQ15173 497 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 RNF20Q5VTR2 975 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 HIST2H2BDQ6DRA6 164 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 OGFOD2Q6N063 350 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 RTN4RL1Q86UN2 441 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 PPFIBP1Q86W92 1011 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 MAPKAPK5Q8IW41 473 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 CPXCR1Q8N123 301 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 LINC01465Q8N7H1 131 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 GOLGA6L1Q8N7Z2 621 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 VGLL2Q8N8G2 317 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 TSEN2Q8NCE0 465 aaKnown RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 MORC4Q8TE76 937 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 SH3RF3Q8TEJ3 882 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 ZNF384Q8TF68 577 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 PIGKQ92643 395 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 KXD1Q9BQD3 176 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 LPIN3Q9BQK8 851 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 GTPBP2Q9BX10 602 aaKnown RBP5.99□□□□□ -1.45
HMGB1-207ENST00000468384 STK31Q9BXU1 1019 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 RBM12Q9NTZ6 932 aaKnown RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms