RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CARSP49589 748 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 NOP14P78316 857 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 PDXDC2PQ6P474 469 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 ARMCX2Q7L311 632 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 RSRC2Q7L4I2 434 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 ADGRF4Q8IZF3 695 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 APOL6Q9BWW8 343 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 PARVAQ9NVD7 372 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 ANGPTL3Q9Y5C1 460 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 TMEM253P0C7T8 217 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 AP3M2P53677 418 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 KLC1Q07866 573 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 C7orf31Q8N865 590 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 ZHX2Q9Y6X8 837 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 FAM205CA6NFA0 338 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 DNAL1Q4LDG9 190 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 FRMPD1Q5SYB0 1578 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 C12orf60Q5U649 245 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 EMSYQ7Z589 1322 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 UBE4BO95155 1302 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 OSTNP61366 133 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 STK4Q13043 487 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 MTMR1Q13613 665 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 MYLK4Q86YV6 388 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 ATP6V1E2Q96A05 226 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 EIF2AK1Q9BQI3 630 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 DIAPH2O60879 1101 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 SMARCA1P28370 1054 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 FIGNQ5HY92 759 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 TTC39CQ8N584 583 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 PPM1NQ8N819 430 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 ANKS1AQ92625 1134 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 TRIM51Q9BSJ1 452 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 AKT3Q9Y243 479 aa20.16■□□□□ 0.82
CCDC88B-204ENST00000463837 PTPRMP28827 1452 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 TBX3O15119 743 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 GNA15P30679 374 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 PGM1P36871 562 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 CDO1Q16878 200 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 RARS2Q5T160 578 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 EP400NLQ6ZTU2 488 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 FBXL13Q8NEE6 735 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 FAM47DPA6NHR8 397 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 QARSP47897 775 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 HIF1AQ16665 826 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 JAMLQ86YT9 394 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 PASD1Q8IV76 773 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 SIX6OS1Q8N1H7 587 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 KRT82Q9NSB4 513 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 ERP44Q9BS26 406 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 PRKAG2Q9UGJ0 569 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 OVOS2A0A0J9YW53 1432 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 OVOS2Q6IE36 1432 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 NEXMIFQ5QGS0 1516 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 INPP1P49441 399 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 TRIM67Q6ZTA4 783 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 RFX8Q6ZV50 586 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 CDKL3Q8IVW4 592 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 RCOR2Q8IZ40 523 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 SMARCAL1Q9NZC9 954 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 FEM1BQ9UK73 627 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 PLAGL2Q9UPG8 496 aa20.15■□□□□ 0.82
CCDC88B-204ENST00000463837 CCDC195A0A1B0GUA6 201 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 PPP1R12AO14974 1030 aaPredicted RBP20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 OCRLQ01968 901 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 ROR1Q01973 937 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 EPHA7Q15375 998 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 QRICH1Q2TAL8 776 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 CYFIP1Q7L576 1253 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 MARCH10Q8NA82 808 aaPredicted RBP20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 FAM167AQ96KS9 214 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 NGRNQ9NPE2 291 aaKnown RBP20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 KCND1Q9NSA2 647 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 KCND2Q9NZV8 630 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 PNMA3Q9UL41 463 aa20.14■□□□□ 0.82
CCDC88B-204ENST00000463837 CAMSAP1Q5T5Y3 1602 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 KIAA0391O15091 583 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 MMP10P09238 476 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 USP49Q70CQ1 688 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 COL23A1Q86Y22 540 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 RANBP17Q9H2T7 1088 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC16A4O15374 487 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 CYP19A1P11511 503 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 HIC1Q14526 733 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 SCG3Q8WXD2 468 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 SPATA31A3Q5VYP0 1347 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 NBPF26B4DH59 902 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 SMAPO00193 183 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 EIF2AK2P19525 551 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 RFX5P48382 616 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 ERVK-24P63145 666 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 MRPS35P82673 323 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 OCA2Q04671 838 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 ITIH4Q14624 930 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 TMEM259Q4ZIN3 620 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 C4orf50Q6ZRC1 276 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 METTL23Q86XA0 190 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 NBPF15Q8N660 670 aa20.14■□□□□ 0.81
CCDC88B-204ENST00000463837 ATP8B3O60423 1300 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms