RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FBXL18Q96ME1 805 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 RPS6KC1Q96S38 1066 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 ADPGKQ9BRR6 497 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 RHOBTB2Q9BYZ6 727 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 PLEKHA4Q9H4M7 779 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 GJB4Q9NTQ9 266 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 DNAJB4Q9UDY4 337 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 IPPQ9Y573 584 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 MYH11P35749 1972 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 DENND4AQ7Z401 1863 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 TRIP11Q15643 1979 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 C2orf16Q68DN1 1984 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 ARHGEF35A5YM69 484 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 LRRIQ4A6NIV6 560 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 LAD1O00515 517 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 N4BP3O15049 544 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 ZBTB39O15060 712 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 DDHD2O94830 711 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 CNPP09543 421 aaKnown RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 ARF4P18085 180 aaPredicted RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 MCM7P33993 719 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 GLUD2P49448 558 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 CLCN4P51793 760 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 NHLH1Q02575 133 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 MBTD1Q05BQ5 628 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 DSC1Q08554 894 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 ELAVL2Q12926 359 aaKnown RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 GRIK3Q13003 919 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 CAPSQ13938 189 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 MAPK6Q16659 721 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 FAM187BQ17R55 369 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 TMEM132AQ24JP5 1023 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 USP41Q3LFD5 358 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 EARS2Q5JPH6 523 aaKnown RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 RARS2Q5T160 578 aaKnown RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 CCDC149Q6ZUS6 474 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 GPR149Q86SP6 731 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 CATSPER3Q86XQ3 398 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 COLGALT2Q8IYK4 626 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 KCTD17Q8N5Z5 321 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 KREMEN2Q8NCW0 462 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 SMG8Q8ND04 991 aaKnown RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 CMASQ8NFW8 434 aaPredicted RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 PIGOQ8TEQ8 1089 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 IFT74Q96LB3 600 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 KLHL5Q96PQ7 755 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 GAD1Q99259 594 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 APOL5Q9BWW9 433 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 POMKQ9H5K3 350 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 XPNPEP1Q9NQW7 623 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 BMP2KQ9NSY1 1161 aaPredicted RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 RYDENQ9NUL5 291 aaKnown RBP7.83□□□□□ -1.16
VPS41-208ENST00000448833 FNIP2Q9P278 1114 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 IGSF9Q9P2J2 1179 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 KMT2EQ8IZD2 1858 aa7.83□□□□□ -1.16
VPS41-208ENST00000448833 MEIS3P2A8K0S8 358 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 CITO14578 2027 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 LILRB3O75022 631 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 TADA2AO75478 443 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 GLUD1P00367 558 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 OR52Z1P0C646 297 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 SPATA31C1P0DKV0 1188 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 EPCAMP16422 314 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 CYP11B2P19099 503 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 GLRA2P23416 452 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 MLH1P40692 756 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 NAMPTP43490 491 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 PLXNA3P51805 1871 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 DSG1Q02413 1049 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 PRPF4BQ13523 1007 aaKnown RBP7.82□□□□□ -1.16
VPS41-208ENST00000448833 KIAA0319Q5VV43 1072 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 TMC5Q6UXY8 1006 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 TMEM173Q86WV6 379 aaPredicted RBP7.82□□□□□ -1.16
VPS41-208ENST00000448833 NOSTRINQ8IVI9 506 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 FBXO18Q8NFZ0 1043 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 DEPTORQ8TB45 409 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 AUTS2Q8WXX7 1259 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 KIFAP3Q92845 792 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 ASIC4Q96FT7 647 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 HERC2P3Q9BVR0 1158 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 EIF2AQ9BY44 585 aaKnown RBP7.82□□□□□ -1.16
VPS41-208ENST00000448833 POLR3FQ9H1D9 316 aaPredicted RBP7.82□□□□□ -1.16
VPS41-208ENST00000448833 MFSD1Q9H3U5 465 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 FZD8Q9H461 694 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 RXFP1Q9HBX9 757 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS41-208ENST00000448833 LRWD1Q9UFC0 647 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 PARP2Q9UGN5 583 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 LIMD1Q9UGP4 676 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 ADAM28Q9UKQ2 775 aa7.82□□□□□ -1.16
VPS41-208ENST00000448833 ZFP37Q9Y6Q3 630 aaPredicted RBP7.82□□□□□ -1.16
VPS41-208ENST00000448833 SF3B1O75533 1304 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS41-208ENST00000448833 CCDC195A0A1B0GUA6 201 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 FAM205CA6NFA0 338 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 C2CD4DB7Z1M9 353 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 ACKR2O00590 384 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 C2CD2LO14523 706 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 TRAPPC3O43617 180 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 JAK2O60674 1132 aa7.81□□□□□ -1.16
VPS41-208ENST00000448833 USO1O60763 962 aaKnown RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms