RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 GUF1Q8N442 669 aaKnown RBP20.53■□□□□ 0.88
HMGA1-205ENST00000447654 C17orf50Q8WW18 174 aa20.53■□□□□ 0.88
HMGA1-205ENST00000447654 SLC35B4Q969S0 331 aa20.53■□□□□ 0.88
HMGA1-205ENST00000447654 PACSIN1Q9BY11 444 aa20.53■□□□□ 0.88
HMGA1-205ENST00000447654 KIAA1683Q9H0B3 1180 aa20.53■□□□□ 0.88
HMGA1-205ENST00000447654 RANBP17Q9H2T7 1088 aaKnown RBP20.53■□□□□ 0.88
HMGA1-205ENST00000447654 HAO1Q9UJM8 370 aa20.53■□□□□ 0.88
HMGA1-205ENST00000447654 SH3GLB1Q9Y371 365 aa20.53■□□□□ 0.88
HMGA1-205ENST00000447654 CDK5RAP2Q96SN8 1893 aa20.53■□□□□ 0.88
HMGA1-205ENST00000447654 SMIM23A6NLE4 172 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 RAD21O60216 631 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 EPHB2P29323 1055 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 CBX3Q13185 183 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 SLC35G1Q2M3R5 365 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 PIK3AP1Q6ZUJ8 805 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 ZNF554Q86TJ5 538 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 ST13P4Q8IZP2 240 aaPredicted RBP20.52■□□□□ 0.88
HMGA1-205ENST00000447654 GFM2Q969S9 779 aaKnown RBP20.52■□□□□ 0.88
HMGA1-205ENST00000447654 TSPAN18Q96SJ8 248 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 PITPNM3Q9BZ71 974 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 TAOK3Q9H2K8 898 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 SEMA4AQ9H3S1 761 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 TUBGCP4Q9UGJ1 667 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 ADAMTS1Q9UHI8 967 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 ACTL7BQ9Y614 415 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 PIM1P11309 404 aaPredicted RBP20.52■□□□□ 0.88
HMGA1-205ENST00000447654 TARSP26639 723 aaKnown RBP20.52■□□□□ 0.88
HMGA1-205ENST00000447654 HOXA10P31260 410 aaPredicted RBP20.52■□□□□ 0.88
HMGA1-205ENST00000447654 MAPK7Q13164 816 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 LRRC14Q15048 493 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 NT5DC3Q86UY8 548 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.52■□□□□ 0.88
HMGA1-205ENST00000447654 FBXO25Q8TCJ0 367 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 NAT14Q8WUY8 206 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 SYNCQ9H7C4 482 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 DDX25Q9UHL0 483 aaKnown RBP20.52■□□□□ 0.88
HMGA1-205ENST00000447654 CHKBQ9Y259 395 aa20.52■□□□□ 0.88
HMGA1-205ENST00000447654 UMODL1Q5DID0 1318 aa20.52■□□□□ 0.87
HMGA1-205ENST00000447654 CYP1A1P04798 512 aaPredicted RBP20.51■□□□□ 0.87
HMGA1-205ENST00000447654 T-ENOLP0DO92 83 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 ATP2B4P23634 1241 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 CALML3P27482 149 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 BTDP43251 543 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 GJA8P48165 433 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 ASIC1P78348 528 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 RCN1Q15293 331 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 KHDC1Q4VXA5 237 aaKnown RBP20.51■□□□□ 0.87
HMGA1-205ENST00000447654 CCDC174Q6PII3 467 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 RGS9BPQ6ZS82 235 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 JAMLQ86YT9 394 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 ALDH16A1Q8IZ83 802 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 NRG4Q8WWG1 115 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 EEF2KMTQ96G04 330 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 RIC8AQ9NPQ8 531 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 GRHL1Q9NZI5 618 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 KLRG2A4D1S0 409 aaPredicted RBP20.51■□□□□ 0.87
HMGA1-205ENST00000447654 NKRFO15226 690 aaKnown RBP eCLIP20.51■□□□□ 0.871e-6■□□□□ 10.1
HMGA1-205ENST00000447654 TCEA3O75764 348 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 ZNF24P17028 368 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 RNASELQ05823 741 aaKnown RBP20.51■□□□□ 0.87
HMGA1-205ENST00000447654 PHLDB3Q6NSJ2 640 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 KIAA0895Q8NCT3 520 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 TRIM31Q9BZY9 425 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 NKIRAS1Q9NYS0 192 aa20.51■□□□□ 0.87
HMGA1-205ENST00000447654 DBR1Q9UK59 544 aaKnown RBP20.51■□□□□ 0.87
HMGA1-205ENST00000447654 PVALEFA0A1B0GWK0 134 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 BIRC5O15392 142 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 BBOX1O75936 387 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 FGGP02679 453 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 TAC1P20366 129 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 RTP1P59025 263 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 ZNF568Q3ZCX4 644 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 MFSD14BQ5SR56 506 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 LRRC55Q6ZSA7 311 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 TSHZ1Q6ZSZ6 1077 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 PROCA1Q8NCQ7 364 aaPredicted RBP20.5■□□□□ 0.87
HMGA1-205ENST00000447654 MGARPQ8TDB4 240 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 WDR60Q8WVS4 1066 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 AGAP3Q96P47 875 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 TSG101Q99816 390 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 SPZ1Q9BXG8 430 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 STK32BQ9NY57 414 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 PTTG2Q9NZH5 202 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 AMFRQ9UKV5 643 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 ROBO3Q96MS0 1386 aa20.5■□□□□ 0.87
HMGA1-205ENST00000447654 LTBP1Q14766 1721 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 ZWINTO95229 277 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 PSMG1O95456 288 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 HPCAP84074 193 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 IL9RQ01113 521 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 CCDC92Q53HC0 331 aaPredicted RBP20.49■□□□□ 0.87
HMGA1-205ENST00000447654 SOGA3Q5TF21 947 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 HS2ST1Q7LGA3 356 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 MPHOSPH6Q99547 160 aaKnown RBP20.49■□□□□ 0.87
HMGA1-205ENST00000447654 TMEM60Q9H2L4 133 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 TBCCD1Q9NVR7 557 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 HSFX1Q9UBD0 423 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 SUN2Q9UH99 717 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 NAV1Q8NEY1 1877 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 KIF13BQ9NQT8 1826 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms