RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ADORA2BP29275 332 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 SDC4P31431 198 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 RNPC3Q96LT9 517 aaKnown RBP13.11□□□□□ -0.31
TCOF1-205ENST00000439160 CBWD1Q9BRT8 395 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 PLAGL2Q9UPG8 496 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 DIS3Q9Y2L1 958 aaKnown RBP13.11□□□□□ -0.31
TCOF1-205ENST00000439160 LIG3P49916 1009 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 VSNL1P62760 191 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 ALS2CLQ60I27 953 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 SCN4BQ8IWT1 228 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 ZNF710Q8N1W2 664 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 KCTD17Q8N5Z5 321 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 PPM1EQ8WY54 764 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 PNMA5Q96PV4 448 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 CYP26B1Q9NR63 512 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 PLAAQ9Y263 795 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 SNX9Q9Y5X1 595 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 HLA-DRAP01903 254 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 ERVK-24P63145 666 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 MFSD14CQ5VZR4 134 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 CBWD2Q8IUF1 395 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 C1orf54Q8WWF1 131 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 STMN2Q93045 179 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 LRRC1Q9BTT6 524 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 KIAA1683Q9H0B3 1180 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 TBX20Q9UMR3 447 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 RGPD8O14715 1765 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-205ENST00000439160 KNDC1Q76NI1 1749 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 ARHGEF37A1IGU5 675 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 RTN2O75298 545 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 RARBP10826 455 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 CALRP27797 417 aaKnown RBP13.11□□□□□ -0.31
TCOF1-205ENST00000439160 ATP11AP98196 1134 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 Q4G0T1 1027 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 SDCCAG8Q86SQ7 713 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-205ENST00000439160 TRIM59Q8IWR1 403 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 KIAA0895Q8NCT3 520 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.11□□□□□ -0.31
TCOF1-205ENST00000439160 ERAP1Q9NZ08 941 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 NRXN3Q9Y4C0 1643 aa13.11□□□□□ -0.31
TCOF1-205ENST00000439160 KIAA0391O15091 583 aaKnown RBP13.1□□□□□ -0.31
TCOF1-205ENST00000439160 CETPP11597 493 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 MSH2P43246 934 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 AP3M2P53677 418 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 CDKAL1Q5VV42 579 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 CCHCR1Q8TD31 782 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 LRRC8CQ8TDW0 803 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 PYROXD1Q8WU10 500 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 IL17RAQ96F46 866 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 ASNSD1Q9NWL6 643 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 NR1D1P20393 614 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 RFC5P40937 340 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 GOLGA8MH3BSY2 632 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 NAB2Q15742 525 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 RWDD4Q6NW29 188 aaKnown RBP13.1□□□□□ -0.31
TCOF1-205ENST00000439160 TRIM72Q6ZMU5 477 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 EP400NLQ6ZTU2 488 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 KCNK18Q7Z418 384 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 RHOT1Q8IXI2 618 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 RBBP8NLQ8NC74 664 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-205ENST00000439160 CFAP57Q96MR6 1250 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 PXMP2Q9NR77 195 aa13.1□□□□□ -0.31
TCOF1-205ENST00000439160 A0A087X0T9 212 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 ATMINO43313 823 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-205ENST00000439160 AKAP3O75969 853 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 FAM228BP0C875 321 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 SARSP49591 514 aaKnown RBP13.09□□□□□ -0.31
TCOF1-205ENST00000439160 SCYL1Q96KG9 808 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 SAYSD1Q9NPB0 183 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 KLHL11Q9NVR0 708 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 A0A1W2PQJ5 194 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 PI4K2BG5E9Z4 385 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 WEE2P0C1S8 567 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 EPHX2P34913 555 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 SOX10P56693 466 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 NOP14P78316 857 aaKnown RBP13.09□□□□□ -0.31
TCOF1-205ENST00000439160 TFDP2Q14188 446 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 HP1BP3Q5SSJ5 553 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-205ENST00000439160 ATF7IP2Q5U623 682 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 CCDC137Q6PK04 289 aaKnown RBP13.09□□□□□ -0.31
TCOF1-205ENST00000439160 RDM1Q8NG50 284 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 GLIS2Q9BZE0 524 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-205ENST00000439160 TMEM8AQ9HCN3 771 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 SMYD2Q9NRG4 433 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 DUSP10Q9Y6W6 482 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 MAGEB2O15479 319 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 HBP1O60381 514 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 NPTX2P47972 431 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 PRPSAP1Q14558 356 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 TRIM65Q6PJ69 517 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 MMS22LQ6ZRQ5 1243 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 REXO1L1PQ8IX06 675 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 IP6K2Q9UHH9 426 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 FNDC3AQ9Y2H6 1198 aaKnown RBP13.09□□□□□ -0.31
TCOF1-205ENST00000439160 VWA5AO00534 786 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 ZBTB39O15060 712 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 SLC4A1P02730 911 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 GGCXP38435 758 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 IER5Q5VY09 327 aa13.09□□□□□ -0.31
TCOF1-205ENST00000439160 CENPUQ71F23 418 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms