RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 KNOP1Q1ED39 458 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 DUOXA2Q1HG44 320 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 KCNV1Q6PIU1 500 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 ASB14A6NK59 587 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 ZSCAN9O15535 394 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 C6orf222P0C671 652 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 EIF3BP55884 814 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 ADAMTS1Q9UHI8 967 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 HACL1Q9UJ83 578 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 SERPIND1P05546 499 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 ALKBH5Q6P6C2 394 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 SH3TC2Q8TF17 1288 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 CALR3Q96L12 384 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 GPBP1L1Q9HC44 474 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 RRAGDQ9NQL2 400 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 CEP170BQ9Y4F5 1589 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 GRAMD1BQ3KR37 738 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 RNF149Q8NC42 400 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 OTUB1Q96FW1 271 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 IP6K2Q9UHH9 426 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 MBD5Q9P267 1494 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 MYBL1P10243 752 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 TPI1P60174 286 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 SPARCL1Q14515 664 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 FASTKD1Q53R41 847 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 ATPAF2Q8N5M1 289 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 ZNF507Q8TCN5 953 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 PPP1R36Q96LQ0 422 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 CDK17Q00537 523 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 HIPK4Q8NE63 616 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 SEPT5Q99719 369 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 ASPSCR1Q9BZE9 553 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 CYTH2Q99418 400 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 CAPN11Q9UMQ6 739 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 DOLKQ9UPQ8 538 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 RARBP10826 455 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 ARL4DP49703 201 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 KCNH2Q12809 1159 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 GTF2H3Q13889 308 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 CYB5R4Q7L1T6 521 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 ABHD10Q9NUJ1 306 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 KIF28PB7ZC32 967 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 MFAP3LO75121 409 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 MMEP08473 750 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 FLOT2Q14254 428 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 SLFNL1Q499Z3 407 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 THOC1Q96FV9 657 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 TRIM54Q9BYV2 358 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 CD209Q9NNX6 404 aa12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 PPARGC1AQ9UBK2 798 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 AGO2Q9UKV8 859 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 APOBEC2Q9Y235 224 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-207ENST00000436346 STK36Q9NRP7 1315 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 DEUP1Q05D60 604 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 RAD51Q06609 339 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 MORC4Q8TE76 937 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 ZNF512Q96ME7 567 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 UNC45AQ9H3U1 944 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 LRRC53A6NM62 1247 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 DCTN3O75935 186 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 AARS2Q5JTZ9 985 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 TBC1D1Q86TI0 1168 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 GPD1LQ8N335 351 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 WDR48Q8TAF3 677 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 LRRC37BQ96QE4 947 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 C11orf70Q9BRQ4 267 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 RNF14Q9UBS8 474 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 ZRANB2O95218 330 aaKnown RBP eCLIP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 IRF1P10914 325 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 HLA-DPA1P20036 260 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 SULT1E1P49888 294 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 FSCBQ5H9T9 825 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 RASIP1Q5U651 963 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 ZC3H18Q86VM9 953 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 TTC39CQ8N584 583 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 CASS4Q9NQ75 786 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 AKT1P31749 480 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 FAM117BQ6P1L5 589 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 GJD4Q96KN9 370 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 GPC5P78333 572 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 MRPS25P82663 173 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 TAF1CQ15572 869 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 ANKS3Q6ZW76 656 aa12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 EML4Q9HC35 981 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-207ENST00000436346 SPDYE5A6NIY4 337 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 A8MXQ7 604 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 CYBBP04839 570 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 CDH6P55285 790 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 SPDYE7PQ495Y7 208 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 DGKHQ86XP1 1220 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 MTBPQ96DY7 904 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 FOPNLQ96NB1 174 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 OSBPL3Q9H4L5 887 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 POLD4Q9HCU8 107 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 PODXLO00592 558 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 TXNP10599 105 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 MCF2P10911 925 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 TWF1Q12792 350 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 GLYCTKQ8IVS8 523 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 MB21D1Q8N884 522 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms