RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 WEE2P0C1S8 567 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 SEC24CP53992 1094 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 PLTPP55058 493 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 DMP1Q13316 513 aaPredicted RBP9.02□□□□□ -0.96
CD44-208ENST00000428726 HSDL1Q3SXM5 330 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 CCDC38Q502W7 563 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 PACS2Q86VP3 889 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 RNF10Q8N5U6 811 aaKnown RBP9.02□□□□□ -0.96
CD44-208ENST00000428726 AFAP1L1Q8TED9 768 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 TXNRD2Q9NNW7 524 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 CWC15Q9P013 229 aaKnown RBP9.02□□□□□ -0.96
CD44-208ENST00000428726 PCDH10Q9P2E7 1040 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 PCDHA10Q9Y5I2 948 aa9.02□□□□□ -0.96
CD44-208ENST00000428726 RANBP2P49792 3224 aaKnown RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 FRMPD4Q14CM0 1322 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 SPOPO43791 374 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 CTNND1O60716 968 aaKnown RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 KRT19P08727 400 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 PLS3P13797 630 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 GAP43P17677 238 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 TCP1P17987 556 aaKnown RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 TMOD1P28289 359 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 LIG4P49917 911 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 HSD17B4P51659 736 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 TNFAIP1Q13829 316 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 BMT2Q1RMZ1 405 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 CEP85LQ5SZL2 805 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 MEI1Q5TIA1 1274 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 DCAF12L1Q5VU92 463 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 CCDC70Q6NSX1 233 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 SV2AQ7L0J3 742 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 FAM83AQ86UY5 434 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 BORCS6Q96GS4 357 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 METTL14Q9HCE5 456 aaKnown RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 JPH1Q9HDC5 661 aaPredicted RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 XPNPEP1Q9NQW7 623 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 AIPL1Q9NZN9 384 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 NXF1Q9UBU9 619 aaKnown RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 TBX20Q9UMR3 447 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 DOCK5Q9H7D0 1870 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 POLR2AP24928 1970 aaKnown RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 TNS1Q9HBL0 1735 aaKnown RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 SPDYE16A6NNV3 312 aaPredicted RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 WDR64B1ANS9 1081 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 PLA2G6O60733 806 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 ATP4AP20648 1035 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 ODF2Q5BJF6 829 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 FKBP1CQ5VVH2 108 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 SCYL3Q8IZE3 742 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 OR5B17Q8NGF7 314 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 ASAP3Q8TDY4 903 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 ZNF653Q96CK0 615 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 ACCSQ96QU6 501 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 C11orf70Q9BRQ4 267 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 FHDC1Q9C0D6 1143 aaPredicted RBP9.02□□□□□ -0.97
CD44-208ENST00000428726 HAPLN2Q9GZV7 340 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 KIAA1683Q9H0B3 1180 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 OLFML3Q9NRN5 406 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 CYP39A1Q9NYL5 469 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 AFG3L2Q9Y4W6 797 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 UBIAD1Q9Y5Z9 338 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 ALG6Q9Y672 507 aa9.02□□□□□ -0.97
CD44-208ENST00000428726 GOLGA6CA6NDK9 693 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 B4GALT5O43286 388 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 TBC1D12O60347 775 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 ARIH2O95376 493 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 GOLGA6DP0CG33 693 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 COMTP21964 271 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 MUTP22033 750 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 RAP1GAPP47736 663 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 CLCN3P51790 818 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 PSMC5P62195 406 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 ITIH3Q06033 890 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 FBXW10Q5XX13 1052 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 TMEM270Q6UE05 265 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 VPS36Q86VN1 386 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 TMEM192Q8IY95 271 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 TMEM161BQ8NDZ6 487 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 ZNF516Q92618 1163 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 ACBD3Q9H3P7 528 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 EFCC1Q9HA90 598 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 GOLGA6AQ9NYA3 693 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 TSKSQ9UJT2 592 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 SLC16A3O15427 465 aaKnown RBP9.01□□□□□ -0.97
CD44-208ENST00000428726 GGPS1O95749 300 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 TCF4P15884 667 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 NUMBP49757 651 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 PCNX4Q63HM2 1172 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 OTUD6AQ7L8S5 288 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 ZNF572Q7Z3I7 529 aaPredicted RBP9.01□□□□□ -0.97
CD44-208ENST00000428726 VSIG10LQ86VR7 867 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 MCF2L2Q86YR7 1114 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 RHPN2Q8IUC4 686 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 ZDHHC14Q8IZN3 488 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 NETO2Q8NC67 525 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 MDM1Q8TC05 714 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 BCAS4Q8TDM0 211 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 LENG1Q96BZ8 264 aaPredicted RBP9.01□□□□□ -0.97
CD44-208ENST00000428726 KLRG1Q96E93 195 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 FNBP1Q96RU3 617 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms