RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 PEX5P50542 639 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 ALCAMQ13740 583 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 FBXW10Q5XX13 1052 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 PLEKHO2Q8TD55 490 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 RPS6KC1Q96S38 1066 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 NCAPGQ9BPX3 1015 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 SYNGAP1Q96PV0 1343 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 DDX39AO00148 427 aaKnown RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 PMM2O15305 246 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 P4HBP07237 508 aaKnown RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 CTNNA2P26232 953 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 GCLMP48507 274 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 HIRAP54198 1017 aaPredicted RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 DCAF15Q66K64 600 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 MAEAQ7L5Y9 396 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 RPUSD2Q8IZ73 545 aaKnown RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 PRELID2Q8N945 189 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 ZSWIM2Q8NEG5 633 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 RAPGEF5Q92565 580 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 PCDHB18PQ96TA0 734 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 ZSWIM1Q9BR11 485 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 KCNH7Q9NS40 1196 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 GRHL1Q9NZI5 618 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 CTTNBP2NLQ9P2B4 639 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 PCYOX1Q9UHG3 505 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 DDX20Q9UHI6 824 aaKnown RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 DBR1Q9UK59 544 aaKnown RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 PCDHA3Q9Y5H8 950 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 ZHX2Q9Y6X8 837 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 PHF2O75151 1096 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 RTN2O75298 545 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 MTA2O94776 668 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 CHRNB2P17787 502 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 PTPRAP18433 802 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 MARCKSL1P49006 195 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 CETN1Q12798 172 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 DLK2Q6UY11 383 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 SCYL3Q8IZE3 742 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 C18orf8Q96DM3 657 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 ACCSQ96QU6 501 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 PABPC3Q9H361 631 aaKnown RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 NOCTQ9UK39 431 aaKnown RBP15.38■□□□□ 0.05
LIG1-202ENST00000427526 CAPN7Q9Y6W3 813 aa15.38■□□□□ 0.05
LIG1-202ENST00000427526 C5orf60A6NFR6 353 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 MAPK13O15264 365 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 SHBGP04278 402 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 PLS3P13797 630 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 HSPA6P17066 643 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 HNRNPH1P31943 449 aaKnown RBP15.37■□□□□ 0.05
LIG1-202ENST00000427526 RARRES1P49788 294 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 BACE1P56817 501 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 PPARDQ03181 441 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 PRKG1Q13976 671 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 QPCTQ16769 361 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 KCNV1Q6PIU1 500 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 MIER3Q7Z3K6 550 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 UBL4BQ8N7F7 174 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 FBXO25Q8TCJ0 367 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 CD101Q93033 1021 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 ATG4CQ96DT6 458 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 GGA3Q9NZ52 723 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 GPRC5DQ9NZD1 345 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 HSPBP1Q9NZL4 362 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 ZNF112Q9UJU3 913 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 SNX24Q9Y343 169 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 RPTORQ8N122 1335 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 CAND2O75155 1236 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 SGPL1O95470 568 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 CHRNA3P32297 505 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 PMS2P54278 862 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 GTF2BQ00403 316 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 IFT88Q13099 833 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 FAM71AQ8IYT1 594 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 XXYLT1Q8NBI6 393 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 SYTL5Q8TDW5 730 aaPredicted RBP15.37■□□□□ 0.05
LIG1-202ENST00000427526 EPS8L1Q8TE68 723 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 KAT5Q92993 513 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 RNF25Q96BH1 459 aaPredicted RBP15.37■□□□□ 0.05
LIG1-202ENST00000427526 TAAR1Q96RJ0 339 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 ST6GALNAC4Q9H4F1 302 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 GINM1Q9NU53 330 aa15.37■□□□□ 0.05
LIG1-202ENST00000427526 GZMAP12544 262 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 COMTP21964 271 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 PLTPP55058 493 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 RPS6P62753 249 aaKnown RBP15.36■□□□□ 0.05
LIG1-202ENST00000427526 IFFO1Q0D2I5 559 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 TTC27Q6P3X3 843 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 NOP9Q86U38 636 aaKnown RBP15.36■□□□□ 0.05
LIG1-202ENST00000427526 ZNF280CQ8ND82 737 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 TMEM117Q9H0C3 514 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 PICK1Q9NRD5 415 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 RIPK3Q9Y572 518 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 SRCAPQ6ZRS2 3230 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 HMGCS2P54868 508 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 ZNF746Q6NUN9 644 aaPredicted RBP15.36■□□□□ 0.05
LIG1-202ENST00000427526 NIPA1Q7RTP0 329 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 MCF2L2Q86YR7 1114 aa15.36■□□□□ 0.05
LIG1-202ENST00000427526 CNOT10Q9H9A5 744 aaKnown RBP15.36■□□□□ 0.05
LIG1-202ENST00000427526 CTDP1Q9Y5B0 961 aaPredicted RBP15.36■□□□□ 0.05
LIG1-202ENST00000427526 VWA5AO00534 786 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms