RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 SLFNL1Q499Z3 407 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 PDZK1Q5T2W1 519 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 CYFIP1Q7L576 1253 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 SFR1Q86XK3 245 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 CDKL3Q8IVW4 592 aaPredicted RBP4.84□□□□□ -1.64
PTPN13-202ENST00000411767 THOC1Q96FV9 657 aaKnown RBP4.84□□□□□ -1.64
PTPN13-202ENST00000411767 SPATA16Q9BXB7 569 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 ARHGEF4Q9NR80 690 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 HACD3Q9P035 362 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 DNAJB4Q9UDY4 337 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 MLXQ9UH92 298 aa4.84□□□□□ -1.64
PTPN13-202ENST00000411767 KPNA4O00629 521 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 AREL1O15033 823 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TCP1P17987 556 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TRHP20396 242 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 GIT2Q14161 759 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 RHEBQ15382 184 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 PLEKHO1Q53GL0 409 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 AFTPHQ6ULP2 937 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ARMC7Q9H6L4 198 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 BATF3Q9NR55 127 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 GMEB2Q9UKD1 530 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 MEI4A8MW99 385 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 KPNA3O00505 521 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ANGPTL7O43827 346 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 SEC31AO94979 1220 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 MT-ND3P03897 115 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 FSHRP23945 695 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 RGS1Q08116 209 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 EHHADHQ08426 723 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 LLGL1Q15334 1064 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 DGKKQ5KSL6 1271 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 PEX26Q7Z412 305 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HEXDCQ8WVB3 486 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HIST1H2AHQ96KK5 128 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HIST1H2AJQ99878 128 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TRIT1Q9H3H1 467 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 IFNKQ9P0W0 207 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 NFE2L3Q9Y4A8 694 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 FARP1Q9Y4F1 1045 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 CCDC144AA2RUR9 1427 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 CNTLNQ9NXG0 1405 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 DFFAO00273 331 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 STX16O14662 325 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 GNA14O95837 355 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 RPLP0P05388 317 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HADHAP40939 763 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ADCY1Q08828 1119 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 EIF2B1Q14232 305 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 FSCN1Q16658 493 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HSDL1Q3SXM5 330 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 DEPDC1BQ8WUY9 529 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 CCDC134Q9H6E4 229 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 A1CFQ9NQ94 594 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 SCAF8Q9UPN6 1271 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 SPACA6W5XKT8 324 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 SLC35F4A4IF30 521 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 CLCA1A8K7I4 914 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ZNF500O60304 480 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 PDE5AO76074 875 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 GTF2H1P32780 548 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 EPHB1P54762 984 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 MLLT6P55198 1093 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 VSNL1P62760 191 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ILF2Q12905 390 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 DCAF17Q5H9S7 520 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TBC1D9BQ66K14 1250 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ARMC6Q6NXE6 501 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ZNF438Q7Z4V0 828 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HID1Q8IV36 788 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TTC39CQ8N584 583 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ZFRQ96KR1 1074 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ENOPH1Q9UHY7 261 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 LCMT1Q9UIC8 334 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 AATKQ6ZMQ8 1374 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 BACH1O14867 736 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ZW10O43264 779 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 SLC26A4O43511 780 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 PIP5K1CO60331 668 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 EXOC3O60645 756 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HUS1O60921 280 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 MAP3K6O95382 1288 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 PGK2P07205 417 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TNFRSF8P28908 595 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HIRAP54198 1017 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 EIF5AP63241 154 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TUBA1BP68363 451 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 CYP51A1Q16850 503 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 LONRF2Q1L5Z9 754 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 EDRF1Q3B7T1 1238 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 RBM20Q5T481 1227 aaKnown RBP4.83□□□□□ -1.64
PTPN13-202ENST00000411767 MACC1Q6ZN28 852 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TUBA1AQ71U36 451 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 HAUS6Q7Z4H7 955 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 P3H2Q8IVL5 708 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 ANKRD13AQ8IZ07 590 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 TCEAL3Q969E4 200 aa4.83□□□□□ -1.64
PTPN13-202ENST00000411767 CMTM5Q96DZ9 223 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms