RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 TRAK2O60296 914 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 POMCP01189 267 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 DYMQ7RTS9 669 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 HAUS6Q7Z4H7 955 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 ZNF280BQ86YH2 543 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 MRPS27Q92552 414 aaKnown RBP22.8■■□□□ 1.24
VSX1-204ENST00000409958 FAM193BQ96PV7 902 aaPredicted RBP22.8■■□□□ 1.24
VSX1-204ENST00000409958 CUEDC2Q9H467 287 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 ZHX3Q9H4I2 956 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 PARP2Q9UGN5 583 aa22.8■■□□□ 1.24
VSX1-204ENST00000409958 PUF60Q9UHX1 559 aaKnown RBP22.8■■□□□ 1.24
VSX1-204ENST00000409958 PLXNA4Q9HCM2 1894 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 CSPG5O95196 566 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 GALTP07902 379 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 KRT17Q04695 432 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 E2F4Q16254 413 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 TCEAL5Q5H9L2 206 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 RESP18Q5W5W9 173 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 IQUBQ8NA54 791 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 GSTCDQ8NEC7 633 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 LEO1Q8WVC0 666 aaPredicted RBP22.79■■□□□ 1.24
VSX1-204ENST00000409958 ZFP42Q96MM3 310 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 FIZ1Q96SL8 496 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 TMEM175Q9BSA9 504 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 GBP3Q9H0R5 595 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 TLR9Q9NR96 1032 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 SNTG2Q9NY99 539 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 FAM13BQ9NYF5 915 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 THEGQ9P2T0 379 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 DNAJB4Q9UDY4 337 aa22.79■■□□□ 1.24
VSX1-204ENST00000409958 BRWD1Q9NSI6 2320 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 K7ENM7 598 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 B4GALT3O60512 393 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 DDHD2O94830 711 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 PROZP22891 400 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 ABCD1P33897 745 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 SCNN1GP51170 649 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 NUCB2P80303 420 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 ZPBP2Q6X784 338 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 FAM178BQ8IXR5 827 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 DNAJC19Q96DA6 116 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 SPATA32Q96LK8 384 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 CDT1Q9H211 546 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 TNMDQ9H2S6 317 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 MIOSQ9NXC5 875 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 KLK14Q9P0G3 267 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 COG5Q9UP83 839 aa22.78■■□□□ 1.24
VSX1-204ENST00000409958 REV3LO60673 3130 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 NT5C1B-RDH14C9J2C7 533 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 TOM1L1O75674 476 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 RECQL4O94761 1208 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 IRS1P35568 1242 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 SLC11A1P49279 550 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 DSC1Q08554 894 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 ZNF568Q3ZCX4 644 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 PDE12Q6L8Q7 609 aaKnown RBP22.77■■□□□ 1.24
VSX1-204ENST00000409958 MPZL3Q6UWV2 235 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 DHX58Q96C10 678 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 TMEM169Q96HH4 297 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 CHAMP1Q96JM3 812 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 RPS6KC1Q96S38 1066 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 LRRC27Q9C0I9 530 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 KBTBD4Q9NVX7 518 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 SEL1LQ9UBV2 794 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 TBX20Q9UMR3 447 aa22.77■■□□□ 1.24
VSX1-204ENST00000409958 ATG2AQ2TAZ0 1938 aa22.77■■□□□ 1.23
VSX1-204ENST00000409958 SPTBN5Q9NRC6 3674 aaKnown RBP22.76■■□□□ 1.23
VSX1-204ENST00000409958 ABLIM1O14639 778 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 ALDH2P05091 517 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 MCF2P10911 925 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 GAP43P17677 238 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 GRIK3Q13003 919 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 COLGALT2Q8IYK4 626 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 PPP2R3CQ969Q6 453 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 IGSF21Q96ID5 467 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 TCHPQ9BT92 498 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 SCAND2PQ9GZW5 306 aaPredicted RBP22.76■■□□□ 1.23
VSX1-204ENST00000409958 ST6GALNAC4Q9H4F1 302 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 GDAQ9Y2T3 454 aa22.76■■□□□ 1.23
VSX1-204ENST00000409958 FSCN2O14926 492 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 POLR2DO15514 142 aaKnown RBP22.75■■□□□ 1.23
VSX1-204ENST00000409958 NCK2O43639 380 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 NMT1P30419 496 aaKnown RBP22.75■■□□□ 1.23
VSX1-204ENST00000409958 GRM5P41594 1212 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 ERVFC1P60507 584 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 GTF2BQ00403 316 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 TMEM173Q86WV6 379 aaPredicted RBP22.75■■□□□ 1.23
VSX1-204ENST00000409958 SFR1Q86XK3 245 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 MICAL1Q8TDZ2 1067 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 ATXN2LQ8WWM7 1075 aaKnown RBP22.75■■□□□ 1.23
VSX1-204ENST00000409958 HLA-CQ95604 372 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 PYM1Q9BRP8 204 aaKnown RBP22.75■■□□□ 1.23
VSX1-204ENST00000409958 CCDC94Q9BW85 323 aaPredicted RBP22.75■■□□□ 1.23
VSX1-204ENST00000409958 MAGEF1Q9HAY2 307 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 FAN1Q9Y2M0 1017 aa22.75■■□□□ 1.23
VSX1-204ENST00000409958 FRMD3A2A2Y4 597 aa22.74■■□□□ 1.23
VSX1-204ENST00000409958 PIGRP01833 764 aa22.74■■□□□ 1.23
VSX1-204ENST00000409958 AMPD3Q01432 767 aa22.74■■□□□ 1.23
VSX1-204ENST00000409958 NOLC1Q14978 699 aaKnown RBP eCLIP22.74■■□□□ 1.23
VSX1-204ENST00000409958 COL19A1Q14993 1142 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms