RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LRRC14Q15048 493 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 SEL1L2Q5TEA6 688 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 TRIM50Q86XT4 487 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 NT5C1BQ96P26 610 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 POLR3FQ9H1D9 316 aaPredicted RBP14.4□□□□□ -0.1
VPS54-203ENST00000409558 PNMA2Q9UL42 364 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 FAM169AQ9Y6X4 670 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 ANKRD31Q8N7Z5 1873 aa14.4□□□□□ -0.1
VPS54-203ENST00000409558 ATRNL1Q5VV63 1379 aa14.4□□□□□ -0.11
VPS54-203ENST00000409558 ANKRD62A6NC57 917 aa14.4□□□□□ -0.11
VPS54-203ENST00000409558 GUCY2CP25092 1073 aa14.4□□□□□ -0.11
VPS54-203ENST00000409558 PRKCIP41743 596 aa14.4□□□□□ -0.11
VPS54-203ENST00000409558 DALRD3Q5D0E6 543 aaKnown RBP14.4□□□□□ -0.11
VPS54-203ENST00000409558 SYCP2LQ5T4T6 812 aa14.4□□□□□ -0.11
VPS54-203ENST00000409558 TARS2Q9BW92 718 aaKnown RBP14.4□□□□□ -0.11
VPS54-203ENST00000409558 TRPC6Q9Y210 931 aa14.4□□□□□ -0.11
VPS54-203ENST00000409558 THSD7AQ9UPZ6 1657 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 PHF20L1A8MW92 1017 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 PIAS1O75925 651 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 GPC5P78333 572 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 PRKCEQ02156 737 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 TMEM270Q6UE05 265 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 NCAPG2Q86XI2 1143 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 PSD3Q9NYI0 1048 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 SEL1LQ9UBV2 794 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 DBR1Q9UK59 544 aaKnown RBP14.39□□□□□ -0.11
VPS54-203ENST00000409558 VWA5AO00534 786 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 GJB1P08034 283 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 WNT7BP56706 349 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 IGBP1P78318 339 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 FBXW10Q5XX13 1052 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 ALS2CLQ60I27 953 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 B4GALNT4Q76KP1 1039 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 IQCKQ8N0W5 287 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 PCDHA10Q9Y5I2 948 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 PIK3R2O00459 728 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 EIF3HO15372 352 aaKnown RBP eCLIP14.39□□□□□ -0.115e-7■■□□□ 12.6
VPS54-203ENST00000409558 TMEM253P0C7T8 217 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 CCDC137Q6PK04 289 aaKnown RBP14.39□□□□□ -0.11
VPS54-203ENST00000409558 UBL4BQ8N7F7 174 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 SCFD2Q8WU76 684 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 THOC1Q96FV9 657 aaKnown RBP14.39□□□□□ -0.11
VPS54-203ENST00000409558 ATP6V1G3Q96LB4 118 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 ISCUQ9H1K1 167 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 SLC38A10Q9HBR0 1119 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 RNF19AQ9NV58 838 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 RNF14Q9UBS8 474 aa14.39□□□□□ -0.11
VPS54-203ENST00000409558 LY75O60449 1722 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 KIAA0754O94854 1291 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 LSP1P33241 339 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 MKRN3Q13064 507 aaKnown RBP14.38□□□□□ -0.11
VPS54-203ENST00000409558 GLE1Q53GS7 698 aaKnown RBP14.38□□□□□ -0.11
VPS54-203ENST00000409558 LRRC71Q8N4P6 559 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 EPS8L1Q8TE68 723 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 RNF25Q96BH1 459 aaPredicted RBP14.38□□□□□ -0.11
VPS54-203ENST00000409558 SEMA4AQ9H3S1 761 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 KCNA3P22001 575 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 PIK3CAP42336 1068 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 C1orf220Q5T0J3 134 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 JAMLQ86YT9 394 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 ANKRD42Q8N9B4 389 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 ARFGEF1Q9Y6D6 1849 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 GSTTP1A0A1W2PQM5 241 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 MYO1FO00160 1098 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 WDR46O15213 610 aaKnown RBP14.38□□□□□ -0.11
VPS54-203ENST00000409558 CAND2O75155 1236 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 ERLIN2O94905 339 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 MAPK4P31152 587 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 C10orf76Q5T2E6 689 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 KRT39Q6A163 491 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 RAB20Q9NX57 234 aa14.38□□□□□ -0.11
VPS54-203ENST00000409558 SUCLA2Q9P2R7 463 aaPredicted RBP14.38□□□□□ -0.11
VPS54-203ENST00000409558 TTC7AQ9ULT0 858 aaPredicted RBP14.38□□□□□ -0.11
VPS54-203ENST00000409558 CYP11B1P15538 503 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 NLRP11P59045 1033 aaKnown RBP14.37□□□□□ -0.11
VPS54-203ENST00000409558 ZNF844Q08AG5 666 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 SLC29A2Q14542 456 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 LRRC45Q96CN5 670 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 IFT74Q96LB3 600 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 PAIP2Q9BPZ3 127 aaKnown RBP14.37□□□□□ -0.11
VPS54-203ENST00000409558 R3HDMLQ9H3Y0 253 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 DMAC2Q9NW81 257 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 PCDHB4Q9Y5E5 795 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 STK24Q9Y6E0 443 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 ATF7P17544 494 aaPredicted RBP14.37□□□□□ -0.11
VPS54-203ENST00000409558 RRM1P23921 792 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 ZNF131P52739 623 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 MFAP3P55082 362 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 DRP2Q13474 957 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 ATP13A4Q4VNC1 1196 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 MOB2Q70IA6 237 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 LMO3Q8TAP4 145 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 WHAMMQ8TF30 809 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 CYFIP2Q96F07 1278 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 GGA3Q9NZ52 723 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 DDX3YO15523 660 aaKnown RBP14.37□□□□□ -0.11
VPS54-203ENST00000409558 KRT19P08727 400 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 HSD17B4P51659 736 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 PLCB3Q01970 1234 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 ZC3H3Q8IXZ2 948 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms