RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 SEPT8Q92599 483 aa22.37■■□□□ 1.17
VSX1-203ENST00000409285 FBXL18Q96ME1 805 aa22.37■■□□□ 1.17
VSX1-203ENST00000409285 CBWD1Q9BRT8 395 aa22.37■■□□□ 1.17
VSX1-203ENST00000409285 HAPLN2Q9GZV7 340 aa22.37■■□□□ 1.17
VSX1-203ENST00000409285 CDT1Q9H211 546 aa22.37■■□□□ 1.17
VSX1-203ENST00000409285 ANKFY1Q9P2R3 1169 aa22.37■■□□□ 1.17
VSX1-203ENST00000409285 NR2F2P24468 414 aa22.36■■□□□ 1.17
VSX1-203ENST00000409285 STX17P56962 302 aa22.36■■□□□ 1.17
VSX1-203ENST00000409285 IQCB1Q15051 598 aa22.36■■□□□ 1.17
VSX1-203ENST00000409285 SPATA1Q5VX52 437 aa22.36■■□□□ 1.17
VSX1-203ENST00000409285 VWCEQ96DN2 955 aa22.36■■□□□ 1.17
VSX1-203ENST00000409285 ZBTB45Q96K62 511 aaPredicted RBP22.36■■□□□ 1.17
VSX1-203ENST00000409285 CEP63Q96MT8 703 aa22.36■■□□□ 1.17
VSX1-203ENST00000409285 HSPBP1Q9NZL4 362 aa22.36■■□□□ 1.17
VSX1-203ENST00000409285 LDHAP00338 332 aaKnown RBP22.35■■□□□ 1.17
VSX1-203ENST00000409285 ZSCAN20P17040 1043 aaPredicted RBP22.35■■□□□ 1.17
VSX1-203ENST00000409285 UBXN11Q5T124 520 aa22.35■■□□□ 1.17
VSX1-203ENST00000409285 DHX40Q8IX18 779 aaKnown RBP22.35■■□□□ 1.17
VSX1-203ENST00000409285 CSGALNACT2Q8N6G5 542 aa22.35■■□□□ 1.17
VSX1-203ENST00000409285 DBF4BQ8NFT6 615 aa22.35■■□□□ 1.17
VSX1-203ENST00000409285 TCHPQ9BT92 498 aa22.35■■□□□ 1.17
VSX1-203ENST00000409285 MKNK1Q9BUB5 465 aa22.35■■□□□ 1.17
VSX1-203ENST00000409285 TSPYL2Q9H2G4 693 aaPredicted RBP22.35■■□□□ 1.17
VSX1-203ENST00000409285 AGO2Q9UKV8 859 aaKnown RBP22.35■■□□□ 1.17
VSX1-203ENST00000409285 FNDC1Q4ZHG4 1894 aaPredicted RBP22.35■■□□□ 1.17
VSX1-203ENST00000409285 CLIC2O15247 247 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 MAPK13O15264 365 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 OGTO15294 1046 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 FGFR1OPO95684 399 aaKnown RBP22.34■■□□□ 1.17
VSX1-203ENST00000409285 RAB27AP51159 221 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 POU5F1Q01860 360 aaKnown RBP22.34■■□□□ 1.17
VSX1-203ENST00000409285 ADAM9Q13443 819 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 NCAPHQ15003 741 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 KYAT1Q16773 422 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 TWF2Q6IBS0 349 aaKnown RBP22.34■■□□□ 1.17
VSX1-203ENST00000409285 CNKSR3Q6P9H4 555 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 XXYLT1Q8NBI6 393 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 NOC3LQ8WTT2 800 aaKnown RBP22.34■■□□□ 1.17
VSX1-203ENST00000409285 MSTO1Q9BUK6 570 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 KIAA1586Q9HCI6 787 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 RGS18Q9NS28 235 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 CETN3O15182 167 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 MGEA5O60502 916 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 ZNF623O75123 536 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 CSF2RAP15509 400 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 RPUSD2Q8IZ73 545 aaKnown RBP22.34■■□□□ 1.17
VSX1-203ENST00000409285 GPD1LQ8N335 351 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 CBX8Q9HC52 389 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 C1orf112Q9NSG2 853 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 NFE2L3Q9Y4A8 694 aa22.34■■□□□ 1.17
VSX1-203ENST00000409285 SMTNL1A8MU46 457 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 SLC16A3O15427 465 aaKnown RBP22.33■■□□□ 1.16
VSX1-203ENST00000409285 EXTL3O43909 919 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 SKIP12755 728 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 PPIGQ13427 754 aaKnown RBP eCLIP22.33■■□□□ 1.16
VSX1-203ENST00000409285 CDR2LQ86X02 465 aaPredicted RBP22.33■■□□□ 1.16
VSX1-203ENST00000409285 AOPEPQ8N6M6 819 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 LINC01599Q8WXQ3 324 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 ADAM2Q99965 735 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 THAP9Q9H5L6 903 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 IL23AQ9NPF7 189 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 FAM105AQ9NUU6 356 aa22.33■■□□□ 1.16
VSX1-203ENST00000409285 LAMA2P24043 3122 aaKnown RBP22.32■■□□□ 1.16
VSX1-203ENST00000409285 A0A0U1RQF3 1178 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 NPTXRO95502 500 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 GRM5P41594 1212 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 MATR3P43243 847 aaKnown RBP eCLIP22.32■■□□□ 1.16
VSX1-203ENST00000409285 CYP2J2P51589 502 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 MCCD1P59942 119 aaPredicted RBP22.32■■□□□ 1.16
VSX1-203ENST00000409285 FPGSQ05932 587 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 FILIP1Q7Z7B0 1213 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 DEFB128Q7Z7B8 93 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 EIF2AQ9BY44 585 aaKnown RBP22.32■■□□□ 1.16
VSX1-203ENST00000409285 TRIM6Q9C030 488 aaPredicted RBP22.32■■□□□ 1.16
VSX1-203ENST00000409285 PCIF1Q9H4Z3 704 aa22.32■■□□□ 1.16
VSX1-203ENST00000409285 C9IYK1 514 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 EXOC3O60645 756 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 EFCAB14O75071 495 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 GNA14O95837 355 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 MARSP56192 900 aaKnown RBP22.31■■□□□ 1.16
VSX1-203ENST00000409285 ENPEPQ07075 957 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 SNRNP35Q16560 246 aaKnown RBP22.31■■□□□ 1.16
VSX1-203ENST00000409285 CDKAL1Q5VV42 579 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 CRELD2Q6UXH1 353 aaPredicted RBP22.31■■□□□ 1.16
VSX1-203ENST00000409285 SLC24A5Q71RS6 500 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 ZBTB33Q86T24 672 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 BADQ92934 168 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 SRRTQ9BXP5 876 aaKnown RBP22.31■■□□□ 1.16
VSX1-203ENST00000409285 HSD3B7Q9H2F3 369 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 CPSF3Q9UKF6 684 aaKnown RBP22.31■■□□□ 1.16
VSX1-203ENST00000409285 FRMD4BQ9Y2L6 1034 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 PCDHB2Q9Y5E7 798 aa22.31■■□□□ 1.16
VSX1-203ENST00000409285 BECN2A8MW95 431 aa22.3■■□□□ 1.16
VSX1-203ENST00000409285 H0YGN5 161 aa22.3■■□□□ 1.16
VSX1-203ENST00000409285 AKAP3O75969 853 aa22.3■■□□□ 1.16
VSX1-203ENST00000409285 BAIAP3O94812 1187 aa22.3■■□□□ 1.16
VSX1-203ENST00000409285 PSMC2P35998 433 aaKnown RBP22.3■■□□□ 1.16
VSX1-203ENST00000409285 FAM189BP81408 668 aa22.3■■□□□ 1.16
VSX1-203ENST00000409285 TPD52L1Q16890 204 aaPredicted RBP22.3■■□□□ 1.16
VSX1-203ENST00000409285 TCTN1Q2MV58 587 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms