RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 FNBP1Q96RU3 617 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 BAG1Q99933 345 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 GCOM2Q9BZD3 368 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 FZD8Q9H461 694 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PDE11AQ9HCR9 933 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TOPORSQ9NS56 1045 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 PRMT7Q9NVM4 692 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 RBAKQ9NYW8 714 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 SIK3Q9Y2K2 1263 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TRIP12Q14669 1992 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 CASP8AP2Q9UKL3 1982 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 A0A0B4J269 797 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TNFSF9P41273 254 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ACLYP53396 1101 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 POLR2FP61218 127 aaKnown RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 MYL7Q01449 175 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CYP24A1Q07973 514 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PPP3CAQ08209 521 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CETN1Q12798 172 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TRIM14Q14142 442 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 NOLC1Q14978 699 aaKnown RBP eCLIP4.03□□□□□ -1.768e-8■□□□□ 10
RTN4-208ENST00000404909 MTFR1Q15390 333 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ENOX2Q16206 610 aaKnown RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 EEF1DP3Q658K8 133 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 RRAGAQ7L523 313 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 USP37Q86T82 979 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CEP120Q8N960 986 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ZNF397Q8NF99 534 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 GLT1D1Q96MS3 346 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 NUP58Q9BVL2 599 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 RNF208Q9H0X6 261 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 UNC93B1Q9H1C4 597 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TRMT13Q9NUP7 481 aaKnown RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 GTF2IRD1Q9UHL9 959 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PTPN22Q9Y2R2 807 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 LRRIQ3A6PVS8 624 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 GPR32O75388 356 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PIGRP01833 764 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ARF4P18085 180 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 PON1P27169 355 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 MXI1P50539 228 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ADAM17P78536 824 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CCZ1BP86790 482 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CCZ1P86791 482 aaPredicted RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 ARID5AQ03989 594 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 NCBP1Q09161 790 aaKnown RBP4.03□□□□□ -1.76
RTN4-208ENST00000404909 ITGA7Q13683 1181 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 RAPGEF1Q13905 1077 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PTGISQ16647 500 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 LHX8Q68G74 356 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TAF2Q6P1X5 1199 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 MPZL3Q6UWV2 235 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 TSHZ1Q6ZSZ6 1077 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ZNF410Q86VK4 478 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 PARD3BQ8TEW8 1205 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ELMO3Q96BJ8 720 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 FBXL18Q96ME1 805 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 DEFB118Q96PH6 123 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 NFKBIZQ9BYH8 718 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.03□□□□□ -1.764e-7■■■■■ 30.7
RTN4-208ENST00000404909 ADAMTS10Q9H324 1103 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 KIAA1586Q9HCI6 787 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 ABHD10Q9NUJ1 306 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 CAPN11Q9UMQ6 739 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 STYXL1Q9Y6J8 313 aa4.03□□□□□ -1.76
RTN4-208ENST00000404909 SOWAHDA6NJG2 315 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 M0QZ92 97 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 TSPAN1O60635 241 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 LRRN2O75325 713 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 LDHAP00338 332 aaKnown RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 IBSPP21815 317 aaPredicted RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 EIF4BP23588 611 aaKnown RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 THPOP40225 353 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 WNT7BP56706 349 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 CDC42EP1Q00587 391 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 POU5F1BQ06416 359 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 BIRC3Q13489 604 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 AMHR2Q16671 573 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 C1orf220Q5T0J3 134 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 CCSAPQ6IQ19 270 aaPredicted RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 GJB7Q6PEY0 223 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 CRELD2Q6UXH1 353 aaPredicted RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 SRGAP1Q7Z6B7 1085 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 RSPH3Q86UC2 560 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 OR8K1Q8NGG5 319 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 TMEM40Q8WWA1 233 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 WNT8BQ93098 351 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 MFSD14AQ96MC6 490 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 SPAG5Q96R06 1193 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 PANX2Q96RD6 677 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 TMEM117Q9H0C3 514 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 STARD7Q9NQZ5 370 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 ZNHIT6Q9NWK9 470 aaKnown RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 TRMT1Q9NXH9 659 aaKnown RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 GRIN2DO15399 1336 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 LRRC53A6NM62 1247 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 KBTBD13C9JR72 458 aa4.02□□□□□ -1.77
RTN4-208ENST00000404909 KIAA0391O15091 583 aaKnown RBP4.02□□□□□ -1.77
RTN4-208ENST00000404909 MAPK13O15264 365 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms