RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PSME4Q14997 1843 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 PEX19P40855 299 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 DMP1Q13316 513 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 KIF22Q14807 665 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 PGM5Q15124 567 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 PHLDB3Q6NSJ2 640 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 EIF1ADQ8N9N8 165 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 CAPS2Q9BXY5 557 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 DDX47Q9H0S4 455 aaKnown RBP10.39□□□□□ -0.75
COL6A3-204ENST00000392003 TMEM59LQ9UK28 342 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 CSADQ9Y600 493 aa10.39□□□□□ -0.75
COL6A3-204ENST00000392003 CCND2P30279 289 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 HNRNPH1P31943 449 aaKnown RBP10.38□□□□□ -0.75
COL6A3-204ENST00000392003 SH2D3AQ9BRG2 576 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 PDCD2LQ9BRP1 358 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 GPRC5DQ9NZD1 345 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 RNF181Q9P0P0 153 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 UTP11Q9Y3A2 253 aaKnown RBP10.38□□□□□ -0.75
COL6A3-204ENST00000392003 MAPK13O15264 365 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 FAM153BP0C7A2 387 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 CORO7P57737 925 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 GTF2BQ00403 316 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 BAATQ14032 418 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-204ENST00000392003 FAM153CQ494X1 144 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 XRRA1Q6P2D8 792 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 PPM1KQ8N3J5 372 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 MREGQ8N565 214 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 UBL4BQ8N7F7 174 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 RDM1Q8NG50 284 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 SH3GL2Q99962 352 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 ST6GALNAC4Q9H4F1 302 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 OSGEPQ9NPF4 335 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 KMT5AQ9NQR1 393 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 FAM153AQ9UHL3 310 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 STXBP5LQ9Y2K9 1186 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 PFASO15067 1338 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 RBM47A0AV96 593 aaKnown RBP10.38□□□□□ -0.75
COL6A3-204ENST00000392003 GOLGA8IPA6NC78 632 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 GOLGA8JA6NMD2 632 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 BACH1O14867 736 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 PYGBP11216 843 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 PTPRAP18433 802 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 MFAP3P55082 362 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 GHRHRQ02643 423 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 HVCN1Q96D96 273 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 HES6Q96HZ4 224 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 TRIM6Q9C030 488 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-204ENST00000392003 PXMP2Q9NR77 195 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 COL4A5P29400 1685 aa10.38□□□□□ -0.75
COL6A3-204ENST00000392003 TISP43B9A030 160 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 PPFIA4O75335 1185 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 DDNO94850 711 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-204ENST00000392003 FGGP02679 453 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 FTLP02792 175 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-204ENST00000392003 DLG4P78352 724 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 PPP3CAQ08209 521 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 GRIK3Q13003 919 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 PLA2G4FQ68DD2 849 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 RASGEF1CQ8N431 466 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 PHC3Q8NDX5 983 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 ATP6V0A1Q93050 837 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 CCDC127Q96BQ5 260 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 RAB17Q9H0T7 212 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 THAP2Q9H0W7 228 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 GPRC5CQ9NQ84 441 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 PGAP2Q9UHJ9 254 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 LTBP3Q9NS15 1303 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 TMEM110-MUSTN1A8MSY1 372 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 C19orf81C9J6K1 198 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 PPFIA2O75334 1257 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 NF2P35240 595 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 GNGT1P63211 74 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 GPC5P78333 572 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 MTMR3Q13615 1198 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 RPUSD2Q8IZ73 545 aaKnown RBP10.37□□□□□ -0.75
COL6A3-204ENST00000392003 GPC2Q8N158 579 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 C3orf20Q8ND61 904 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 KIFAP3Q92845 792 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 CEP170P1Q96L14 293 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 CENPHQ9H3R5 247 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 FAM114A2Q9NRY5 505 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 BLOC1S6Q9UL45 172 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 PCDHA10Q9Y5I2 948 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 FAM170AA1A519 330 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 MIF4GDA9UHW6 222 aaKnown RBP10.37□□□□□ -0.75
COL6A3-204ENST00000392003 VWA5AO00534 786 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 ERVK-9P63128 1117 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 CCDC15Q0P6D6 951 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 EPC2Q52LR7 807 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 WDR78Q5VTH9 848 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 ZNF746Q6NUN9 644 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-204ENST00000392003 ARHGEF19Q8IW93 802 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 ARL8AQ96BM9 186 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 BICD1Q96G01 975 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 NT5C1BQ96P26 610 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 MOV10L1Q9BXT6 1211 aaKnown RBP10.37□□□□□ -0.75
COL6A3-204ENST00000392003 CARD9Q9H257 536 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 AMACRQ9UHK6 382 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 RASAL2Q9UJF2 1139 aa10.37□□□□□ -0.75
COL6A3-204ENST00000392003 DENND3A2RUS2 1198 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms