RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ADAMTS4O75173 837 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 ABCD1P33897 745 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 NFIL3Q16649 462 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 ABCB6Q9NP58 842 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 DMAC2Q9NW81 257 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 ARMCX3Q9UH62 379 aaPredicted RBP13.51□□□□□ -0.25
CIITA-202ENST00000381835 DDX20Q9UHI6 824 aaKnown RBP13.51□□□□□ -0.25
CIITA-202ENST00000381835 FRMD4BQ9Y2L6 1034 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 SIP14410 1827 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 CTAGE15A4D2H0 777 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 ASAP2O43150 1006 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 ZEB2O60315 1214 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 KPNA6O60684 536 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 CTAGE8P0CG41 777 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 PSMC2P35998 433 aaKnown RBP13.51□□□□□ -0.25
CIITA-202ENST00000381835 LIG4P49917 911 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 PRMT2P55345 433 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 MARSP56192 900 aaKnown RBP13.51□□□□□ -0.25
CIITA-202ENST00000381835 TFDP1Q14186 410 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 VWA3BQ502W6 1294 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 SLC39A4Q6P5W5 647 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 CTAGE6Q86UF2 777 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 ZBTB8OSQ8IWT0 167 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 CTAGE4Q8IX94 777 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 FAM186BQ8IYM0 893 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 LINC01465Q8N7H1 131 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 C7orf31Q8N865 590 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 POMGNT1Q8WZA1 660 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 FAM49AQ9H0Q0 323 aaPredicted RBP13.51□□□□□ -0.25
CIITA-202ENST00000381835 NDST4Q9H3R1 872 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 ABHD10Q9NUJ1 306 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 HSPBP1Q9NZL4 362 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 HDAC6Q9UBN7 1215 aa13.51□□□□□ -0.25
CIITA-202ENST00000381835 SCN10AQ9Y5Y9 1956 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 TULP1O00294 542 aaPredicted RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 SLC16A3O15427 465 aaKnown RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 FECHP22830 423 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 ADSSP30520 456 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 EFNA5P52803 228 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 ZNF200P98182 395 aaPredicted RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 HIC1Q14526 733 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 WHAMMP3Q1A5X7 153 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 DCAF17Q5H9S7 520 aaPredicted RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 TCERG1LQ5VWI1 586 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 CYP26C1Q6V0L0 522 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 FRMD5Q7Z6J6 570 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 SLC9A9Q8IVB4 645 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 TRIM59Q8IWR1 403 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 ZSWIM2Q8NEG5 633 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 MTG1Q9BT17 334 aaPredicted RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 TMEM134Q9H6X4 195 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 WBP1LQ9NX94 342 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 L1RE1Q9UN81 338 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.5□□□□□ -0.25
CIITA-202ENST00000381835 GOLGA8IPA6NC78 632 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 GOLGA8JA6NMD2 632 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 INO80B-WBP1J3KQ70 363 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 ABL1P00519 1130 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 EDN1P05305 212 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 ASGR1P07306 291 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 SCP2P22307 547 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 SNRPFP62306 86 aaKnown RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 KCNA10Q16322 511 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 CDCA2Q69YH5 1023 aaPredicted RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 C12orf56Q8IXR9 622 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 KIAA0319LQ8IZA0 1049 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 XXYLT1Q8NBI6 393 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 SH3TC2Q8TF17 1288 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 ZBTB9Q96C00 473 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 SAAL1Q96ER3 474 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 SCLT1Q96NL6 688 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 TARS2Q9BW92 718 aaKnown RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 INO80BQ9C086 356 aaPredicted RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 C2orf40Q9H1Z8 148 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 HMX1Q9NP08 348 aaPredicted RBP13.5□□□□□ -0.25
CIITA-202ENST00000381835 MYO1AQ9UBC5 1043 aa13.5□□□□□ -0.25
CIITA-202ENST00000381835 A0A087WZ62 844 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 TREHO43280 583 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 CSDE1O75534 798 aaKnown RBP13.49□□□□□ -0.25
CIITA-202ENST00000381835 TFRCP02786 760 aaKnown RBP13.49□□□□□ -0.25
CIITA-202ENST00000381835 CYP2C9P11712 490 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 TMEM62Q0P6H9 643 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 MYBPC2Q14324 1141 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 MAPK6Q16659 721 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 FKBP15Q5T1M5 1219 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 NLRP7Q8WX94 980 aa13.49□□□□□ -0.25
CIITA-202ENST00000381835 FDXACB1Q9BRP7 624 aaPredicted RBP13.49□□□□□ -0.25
CIITA-202ENST00000381835 METTL14Q9HCE5 456 aaKnown RBP13.49□□□□□ -0.25
CIITA-202ENST00000381835 C17orf102A2RUQ5 167 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 MYCP01106 439 aaPredicted RBP13.48□□□□□ -0.25
CIITA-202ENST00000381835 PRKCBP05771 671 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 MATR3P43243 847 aaKnown RBP eCLIP13.48□□□□□ -0.25
CIITA-202ENST00000381835 NLRP11P59045 1033 aaKnown RBP13.48□□□□□ -0.25
CIITA-202ENST00000381835 PTENP60484 403 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 VSNL1P62760 191 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 SLC20A2Q08357 652 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 TRIM14Q14142 442 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 NBPF20Q3BBV1 942 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 LEKR1Q6ZMV7 388 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 CCDC155Q8N6L0 562 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms