RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SHC3Q92529 594 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 MFSD14AQ96MC6 490 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 FBXL18Q96ME1 805 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 HAPLN2Q9GZV7 340 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 CTDP1Q9Y5B0 961 aaPredicted RBP14.44□□□□□ -0.1
CCDC3-202ENST00000378839 TMEM110-MUSTN1A8MSY1 372 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 GOLGA8KD6RF30 607 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 PMM2O15305 246 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 HSD17B3P37058 310 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 NLRX1Q86UT6 975 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 DDX1Q92499 740 aaKnown RBP14.43□□□□□ -0.1
CCDC3-202ENST00000378839 SEC14L1Q92503 715 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 GLG1Q92896 1179 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 GPRASP2Q96D09 838 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 FEZ2Q9UHY8 353 aaPredicted RBP14.43□□□□□ -0.1
CCDC3-202ENST00000378839 TCRBV7S2A1N4TA0A589 114 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 DMP1Q13316 513 aaPredicted RBP14.43□□□□□ -0.1
CCDC3-202ENST00000378839 CFAP58Q5T655 872 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 ABHD15Q6UXT9 468 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 SAMD3Q8N6K7 520 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 WHAMMQ8TF30 809 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 TIPINQ9BVW5 301 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 PLAAQ9Y263 795 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 COQ4Q9Y3A0 265 aa14.43□□□□□ -0.1
CCDC3-202ENST00000378839 EDN1P05305 212 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 IRX3P78415 501 aaPredicted RBP14.42□□□□□ -0.1
CCDC3-202ENST00000378839 PPARDQ03181 441 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CYP24A1Q07973 514 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 HLTFQ14527 1009 aaKnown RBP eCLIP14.42□□□□□ -0.1
CCDC3-202ENST00000378839 LMBRD2Q68DH5 695 aaPredicted RBP14.42□□□□□ -0.1
CCDC3-202ENST00000378839 LEKR1Q6ZMV7 388 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 SV2AQ7L0J3 742 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 DPH5Q9H2P9 285 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 R3HDMLQ9H3Y0 253 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 GINM1Q9NU53 330 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 PTPRJQ12913 1337 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 PCNTO95613 3336 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 PEX5P50542 639 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 HIRAP54198 1017 aaPredicted RBP14.42□□□□□ -0.1
CCDC3-202ENST00000378839 HADHBP55084 474 aaKnown RBP14.42□□□□□ -0.1
CCDC3-202ENST00000378839 ACTR2P61160 394 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CTTNBP2NLQ9P2B4 639 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CCDC188H7C350 402 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 TULP2O00295 520 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CCDC172P0C7W6 258 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CYP11B1P15538 503 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 COMTP21964 271 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 GPC3P51654 580 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 PRKCEQ02156 737 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 PRKG1Q13976 671 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 UBAP2Q5T6F2 1119 aaKnown RBP14.42□□□□□ -0.1
CCDC3-202ENST00000378839 KRT39Q6A163 491 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CATSPERGQ6ZRH7 1159 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CYFIP1Q7L576 1253 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 SPIRE2Q8WWL2 714 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 CD101Q93033 1021 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 TRIM31Q9BZY9 425 aa14.42□□□□□ -0.1
CCDC3-202ENST00000378839 JPH1Q9HDC5 661 aaPredicted RBP14.42□□□□□ -0.1
CCDC3-202ENST00000378839 OPA1O60313 960 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 RTN2O75298 545 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 DLATP10515 647 aaKnown RBP14.41□□□□□ -0.1
CCDC3-202ENST00000378839 ATP1A2P50993 1020 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 GPC5P78333 572 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 CNTN2Q02246 1040 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 TCEAL1Q15170 157 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 CD302Q8IX05 232 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 NSUN6Q8TEA1 469 aaKnown RBP14.41□□□□□ -0.1
CCDC3-202ENST00000378839 C12orf42Q96LP6 360 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 FAM213AQ9BRX8 229 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 TMEM8AQ9HCN3 771 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 CYP26B1Q9NR63 512 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 SEPT9Q9UHD8 586 aaPredicted RBP14.41□□□□□ -0.1
CCDC3-202ENST00000378839 TCEAL9Q9UHQ7 104 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 SPATA31C2B4DYI2 1134 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 PTENP60484 403 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 SNRPFP62306 86 aaKnown RBP14.41□□□□□ -0.1
CCDC3-202ENST00000378839 PPFIA1Q13136 1202 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 MESDQ14696 234 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 ZBTB41Q5SVQ8 909 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 LLGL2Q6P1M3 1020 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 TTC27Q6P3X3 843 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 GOLGA6L1Q8N7Z2 621 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 POMGNT1Q8WZA1 660 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 KLRG1Q96E93 195 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 CARD9Q9H257 536 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 RAB20Q9NX57 234 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 DAAM1Q9Y4D1 1078 aa14.41□□□□□ -0.1
CCDC3-202ENST00000378839 SPDYE16A6NNV3 312 aaPredicted RBP14.4□□□□□ -0.1
CCDC3-202ENST00000378839 SMTNP53814 917 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 CETN1Q12798 172 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 CUL1Q13616 776 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 C18orf8Q96DM3 657 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 TRIM7Q9C029 511 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 SLITRK6Q9H5Y7 841 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 PICK1Q9NRD5 415 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 SLC9A2Q9UBY0 812 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 PYGMP11217 842 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 PDCLQ13371 301 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 C11orf63Q6NUN7 778 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 RHOT2Q8IXI1 618 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms