RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 BCAR1P56945 870 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 KRR1Q13601 381 aaKnown RBP11.23□□□□□ -0.61
RTN3-206ENST00000377819 MAPK6Q16659 721 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 TRIM48Q8IWZ4 208 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 PCYOX1LQ8NBM8 494 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 KIAA1586Q9HCI6 787 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 GCNT4Q9P109 453 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 AP3B1O00203 1094 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 ENC1O14682 589 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 SEMA3EO15041 775 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 TRAPPC3O43617 180 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 MOCS2O96007 188 aaPredicted RBP11.23□□□□□ -0.61
RTN3-206ENST00000377819 ZAP70P43403 619 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 SCNN1DP51172 638 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 MMRN1Q13201 1228 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 CYLC2Q14093 348 aaPredicted RBP11.23□□□□□ -0.61
RTN3-206ENST00000377819 ZNF827Q17R98 1081 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 SRLQ86TD4 932 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 MRPL50Q8N5N7 158 aaKnown RBP11.23□□□□□ -0.61
RTN3-206ENST00000377819 RTL3Q8N8U3 475 aaKnown RBP11.23□□□□□ -0.61
RTN3-206ENST00000377819 TTLL11Q8NHH1 800 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.23□□□□□ -0.61
RTN3-206ENST00000377819 DSCC1Q9BVC3 393 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 PCDHB15Q9Y5E8 787 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 TNKSO95271 1327 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 TRIM13O60858 407 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 PPP3CCP48454 512 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 C17orf53Q8N3J3 647 aaPredicted RBP11.23□□□□□ -0.61
RTN3-206ENST00000377819 MMGT1Q8N4V1 131 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 POMGNT2Q8NAT1 580 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 SIK2Q9H0K1 926 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 HPS4Q9NQG7 708 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 SPASTQ9UBP0 616 aa11.23□□□□□ -0.61
RTN3-206ENST00000377819 CLIC2O15247 247 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 TALDO1P37837 337 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 LAMB3Q13751 1172 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 ALKBH5Q6P6C2 394 aaKnown RBP11.22□□□□□ -0.61
RTN3-206ENST00000377819 CCDC24Q8N4L8 307 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 ZBTB38Q8NAP3 1195 aaPredicted RBP11.22□□□□□ -0.61
RTN3-206ENST00000377819 P2RX5Q93086 422 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 C19orf44Q9H6X5 657 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 SPATA2Q9UM82 520 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 RNF103O00237 685 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 PDHA1P08559 390 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 E2F4Q16254 413 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 CNGA3Q16281 694 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 AASDHQ4L235 1098 aaPredicted RBP11.22□□□□□ -0.61
RTN3-206ENST00000377819 DGKHQ86XP1 1220 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 RFWD2Q8NHY2 731 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 WWP1Q9H0M0 922 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 TSR3Q9UJK0 312 aaKnown RBP11.22□□□□□ -0.61
RTN3-206ENST00000377819 CLDN3O15551 220 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 KRT6AP02538 564 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 KRT6BP04259 564 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 CALB1P05937 261 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 CDC27P30260 824 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 KCNJ6P48051 423 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 KRT6CP48668 564 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 HIST2H2ACQ16777 129 aaPredicted RBP11.22□□□□□ -0.61
RTN3-206ENST00000377819 UGP2Q16851 508 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 TBC1D10BQ4KMP7 808 aaPredicted RBP11.22□□□□□ -0.61
RTN3-206ENST00000377819 HIST2H2AA3Q6FI13 130 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 EMBQ6PCB8 327 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 MACC1Q6ZN28 852 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 IFNEQ86WN2 208 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 PLEKHM2Q8IWE5 1019 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 RNFT2Q96EX2 444 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 FRMD6Q96NE9 622 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 CCDC134Q9H6E4 229 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 COPG2Q9UBF2 871 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 SEPT3Q9UH03 358 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 PKP3Q9Y446 797 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 MROH2AA6NES4 1674 aa11.22□□□□□ -0.61
RTN3-206ENST00000377819 GOLGA4Q13439 2230 aaKnown RBP11.22□□□□□ -0.61
RTN3-206ENST00000377819 CYTH3O43739 400 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 PDIA3P30101 505 aaKnown RBP11.21□□□□□ -0.61
RTN3-206ENST00000377819 RASSF3Q86WH2 238 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 SPICE1Q8N0Z3 855 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 LRRC39Q96DD0 335 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 MAP10Q9P2G4 905 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 DCTN4Q9UJW0 460 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 KITP10721 976 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 PHKA2P46019 1235 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 MFSD4BQ5TF39 518 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 EPM2AIP1Q7L775 607 aaPredicted RBP11.21□□□□□ -0.61
RTN3-206ENST00000377819 ZNF438Q7Z4V0 828 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 MICALL2Q8IY33 904 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 FLCNQ8NFG4 579 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 THOC1Q96FV9 657 aaKnown RBP11.21□□□□□ -0.61
RTN3-206ENST00000377819 NEK6Q9HC98 313 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 KRCC1Q9NPI7 259 aaPredicted RBP11.21□□□□□ -0.61
RTN3-206ENST00000377819 FHOD1Q9Y613 1164 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 UBE4BO95155 1302 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 BTBD18B2RXH4 712 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 TLR2O60603 784 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 FTCDO95954 541 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 YWHAQP27348 245 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 IDI1Q13907 227 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 PID1Q7Z2X4 250 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 MCPH1Q8NEM0 835 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms