RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 USP42Q9H9J4 1324 aaKnown RBP5.74□□□□□ -1.49
USP48-202ENST00000374730 CPDO75976 1380 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 TMEM94Q12767 1356 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 TCRBV16S1A1N1A0A5B0 115 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 ESYT3A0FGR9 886 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 KCNK3O14649 394 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 MATN3O15232 486 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 ALDH1L1O75891 902 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 MPIG6BO95866 241 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 ZNF888P0CJ79 500 aaPredicted RBP5.73□□□□□ -1.49
USP48-202ENST00000374730 MC4RP32245 332 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 SELENOPP49908 381 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 ANAPC15P60006 121 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 WDR72Q3MJ13 1102 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 HSP90AB4PQ58FF6 505 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 OVCH1Q7RTY7 1134 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 TNPO1Q92973 898 aaKnown RBP5.73□□□□□ -1.49
USP48-202ENST00000374730 WNK4Q96J92 1243 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 LMF1Q96S06 567 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 PTPN18Q99952 460 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 ZDHHC5Q9C0B5 715 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 KLC2Q9H0B6 622 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 MSL2Q9HCI7 577 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 TRIM39Q9HCM9 518 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 CHPF2Q9P2E5 772 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 ISY1Q9ULR0 285 aaKnown RBP5.73□□□□□ -1.49
USP48-202ENST00000374730 HDAC5Q9UQL6 1122 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 MEGF6O75095 1541 aa5.73□□□□□ -1.49
USP48-202ENST00000374730 NUP188Q5SRE5 1749 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 SHANK3Q9BYB0 1731 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 SLC12A8A0AV02 714 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 FSD2A1L4K1 749 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 PLD2O14939 933 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 KCNQ3O43525 872 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 ZNF623O75123 536 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 HSP90AA1P07900 732 aaKnown RBP5.72□□□□□ -1.49
USP48-202ENST00000374730 EIF2S2P20042 333 aaKnown RBP5.72□□□□□ -1.49
USP48-202ENST00000374730 MCCP23508 829 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 SDHAP31040 664 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 MCM2P49736 904 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 NUCB2P80303 420 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 SEC23AQ15436 765 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 CDSNQ15517 529 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 PPP1R42Q7Z4L9 355 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 LILRB2Q8N423 598 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 DLG3Q92796 817 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 KIF1BPQ96EK5 621 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 HYPKQ9NX55 129 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 TCAF1Q9Y4C2 921 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 ASB1Q9Y576 335 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 B3GALT1Q9Y5Z6 326 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 UTYO14607 1347 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 NPHP3Q7Z494 1330 aa5.72□□□□□ -1.49
USP48-202ENST00000374730 PI4KAP2A4QPH2 592 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 SCDO00767 359 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 MAFO75444 373 aaPredicted RBP5.71□□□□□ -1.5
USP48-202ENST00000374730 MMEP08473 750 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 NBPF7P0C2Y1 421 aaPredicted RBP5.71□□□□□ -1.5
USP48-202ENST00000374730 ATF3P18847 181 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 CHMLP26374 656 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 ECE1P42892 770 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 RAC3P60763 192 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 NFYCQ13952 458 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 EIF4HQ15056 248 aaKnown RBP5.71□□□□□ -1.5
USP48-202ENST00000374730 TMEM177Q53S58 311 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 KANK2Q63ZY3 851 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 KSR2Q6VAB6 950 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 FGD2Q7Z6J4 655 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 PI4KAP1Q8N8J0 262 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 ASB15Q8WXK1 588 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 NEIL1Q96FI4 390 aaPredicted RBP5.71□□□□□ -1.5
USP48-202ENST00000374730 DNAJC2Q99543 621 aaKnown RBP5.71□□□□□ -1.5
USP48-202ENST00000374730 AMNQ9BXJ7 453 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 DEF6Q9H4E7 631 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 DDX21Q9NR30 783 aaKnown RBP eCLIP5.71□□□□□ -1.5
USP48-202ENST00000374730 PTPN22Q9Y2R2 807 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 TTC41PQ6P2S7 1318 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 TJP1Q07157 1748 aa5.71□□□□□ -1.5
USP48-202ENST00000374730 NHSL1Q5SYE7 1610 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 STRCQ7RTU9 1775 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 COL15A1P39059 1388 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 B4E1Z4 1266 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 GOLGA6L22H0YM25 854 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 FOXP2O15409 715 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 HIP1RO75146 1068 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 SURF6O75683 361 aaKnown RBP5.7□□□□□ -1.5
USP48-202ENST00000374730 DDX58O95786 925 aaKnown RBP5.7□□□□□ -1.5
USP48-202ENST00000374730 HMGCRP04035 888 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 PHKG2P15735 406 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 R3HDM1Q15032 1099 aaKnown RBP5.7□□□□□ -1.5
USP48-202ENST00000374730 FNDC3BQ53EP0 1204 aaKnown RBP5.7□□□□□ -1.5
USP48-202ENST00000374730 TM4SF20Q53R12 229 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 TMEM200BQ69YZ2 307 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 FSTL4Q6MZW2 842 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 ABHD17CQ6PCB6 329 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 OTOP1Q7RTM1 612 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 ERC1Q8IUD2 1116 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 LINS1Q8NG48 757 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 Q8TCH9 128 aa5.7□□□□□ -1.5
USP48-202ENST00000374730 RAPGEF4Q8WZA2 1011 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms