RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 ATOH1Q92858 354 aaPredicted RBP11.53□□□□□ -0.56
CLRN3-201ENST00000368671 CPB2Q96IY4 423 aa11.53□□□□□ -0.56
CLRN3-201ENST00000368671 TMEM175Q9BSA9 504 aa11.53□□□□□ -0.56
CLRN3-201ENST00000368671 ZSWIM4Q9H7M6 989 aa11.53□□□□□ -0.56
CLRN3-201ENST00000368671 KANSL3Q9P2N6 904 aa11.53□□□□□ -0.56
CLRN3-201ENST00000368671 ORC3Q9UBD5 711 aaPredicted RBP11.53□□□□□ -0.56
CLRN3-201ENST00000368671 LIMD1Q9UGP4 676 aa11.53□□□□□ -0.56
CLRN3-201ENST00000368671 PRG3Q9Y2Y8 225 aaPredicted RBP11.53□□□□□ -0.56
CLRN3-201ENST00000368671 C2orf16Q68DN1 1984 aa11.53□□□□□ -0.56
CLRN3-201ENST00000368671 H0Y858 1186 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 INO80B-WBP1J3KQ70 363 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 ASAP2O43150 1006 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 TSPAN1O60635 241 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 CTDNEP1O95476 244 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 URODP06132 367 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 CNPP09543 421 aaKnown RBP11.52□□□□□ -0.57
CLRN3-201ENST00000368671 MYBP10242 640 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 MLH1P40692 756 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 CLCN4P51793 760 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 AK2P54819 239 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 SPIRE1Q08AE8 756 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 SMYD5Q6GMV2 418 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 CCDC149Q6ZUS6 474 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 GPR149Q86SP6 731 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 SMG8Q8ND04 991 aaKnown RBP11.52□□□□□ -0.57
CLRN3-201ENST00000368671 CNNM3Q8NE01 707 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 WASF1Q92558 559 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 EIF2AK1Q9BQI3 630 aaKnown RBP11.52□□□□□ -0.57
CLRN3-201ENST00000368671 HERC2P3Q9BVR0 1158 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 APOL6Q9BWW8 343 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 EIF2AQ9BY44 585 aaKnown RBP11.52□□□□□ -0.57
CLRN3-201ENST00000368671 MFSD1Q9H3U5 465 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 BRMS1Q9HCU9 246 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 XPNPEP1Q9NQW7 623 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 MRPL17Q9NRX2 175 aaKnown RBP11.52□□□□□ -0.57
CLRN3-201ENST00000368671 MARCH5Q9NX47 278 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 STK39Q9UEW8 545 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 IPPQ9Y573 584 aa11.52□□□□□ -0.57
CLRN3-201ENST00000368671 SLITRK3O94933 977 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 SOD2P04179 222 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 AXLP30530 894 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 PRSS12P56730 875 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 NCBP1Q09161 790 aaKnown RBP11.51□□□□□ -0.57
CLRN3-201ENST00000368671 TFDP1Q14186 410 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 CALCRLQ16602 461 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 NOTUMQ6P988 496 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 TAS1R1Q7RTX1 841 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 COLGALT2Q8IYK4 626 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 TMEM105Q8N8V8 129 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 NECAB1Q8N987 351 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 ASAP3Q8TDY4 903 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 ACSF2Q96CM8 615 aaPredicted RBP11.51□□□□□ -0.57
CLRN3-201ENST00000368671 CCDC43Q96MW1 224 aaKnown RBP11.51□□□□□ -0.57
CLRN3-201ENST00000368671 GAD1Q99259 594 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 TRIM6Q9C030 488 aaPredicted RBP11.51□□□□□ -0.57
CLRN3-201ENST00000368671 IRF2BPLQ9H1B7 796 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 UBN1Q9NPG3 1134 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 MAN1C1Q9NR34 630 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 MIOSQ9NXC5 875 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 USTQ9Y2C2 406 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 HES2Q9Y543 173 aa11.51□□□□□ -0.57
CLRN3-201ENST00000368671 ARL5CA6NH57 179 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 GFRA3O60609 400 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 LILRB3O75022 631 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 LARGE1O95461 756 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 FDPSP14324 419 aaKnown RBP11.5□□□□□ -0.57
CLRN3-201ENST00000368671 GLUD2P49448 558 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 SCNN1GP51170 649 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 PTENP60484 403 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 PTGDRQ13258 359 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 CAPSQ13938 189 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 MXD4Q14582 209 aaPredicted RBP11.5□□□□□ -0.57
CLRN3-201ENST00000368671 ANKRD1Q15327 319 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 OTOP3Q7RTS5 596 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 CDR2LQ86X02 465 aaPredicted RBP11.5□□□□□ -0.57
CLRN3-201ENST00000368671 ZFP42Q96MM3 310 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 RPS6KC1Q96S38 1066 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 CSRNP2Q9H175 543 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 PCDHA12Q9UN75 941 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 SSX2IPQ9Y2D8 614 aa11.5□□□□□ -0.57
CLRN3-201ENST00000368671 MUC6Q6W4X9 2439 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 A0A087WWV3 80 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 F8W810 466 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 B4GALT5O43286 388 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 USO1O60763 962 aaKnown RBP11.49□□□□□ -0.57
CLRN3-201ENST00000368671 NR1I2O75469 434 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 DGAT1O75907 488 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 NPTXRO95502 500 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 ADH1AP07327 375 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 ARF4P18085 180 aaPredicted RBP11.49□□□□□ -0.57
CLRN3-201ENST00000368671 AKAP5P24588 427 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 TXKP42681 527 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 MBTD1Q05BQ5 628 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 PCBP1Q15365 356 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLRN3-201ENST00000368671 MAEAQ7L5Y9 396 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 HACE1Q8IYU2 909 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 TTC13Q8NBP0 860 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 FLCNQ8NFG4 579 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 TNFRSF25Q93038 417 aa11.49□□□□□ -0.57
CLRN3-201ENST00000368671 CCDC51Q96ER9 411 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms