RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 LAMC2Q13753 1193 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 SLMAPQ14BN4 828 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 BTBD8Q5XKL5 378 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 TNIP3Q96KP6 325 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 TTC1Q99614 292 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 KLHL14Q9P2G3 628 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 KIAA1210Q9ULL0 1709 aa12.35□□□□□ -0.43
SYNE1-204ENST00000367248 MSH4O15457 936 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 GCLCP48506 637 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 KRT17Q04695 432 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 C2orf54Q08AI8 447 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 ARHGAP24Q8N264 748 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 AP1M1Q9BXS5 423 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 SARS2Q9NP81 518 aaKnown RBP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 AGAP1Q9UPQ3 857 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 TRAPPC3O43617 180 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 IGFLR1Q9H665 355 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 PITPNM2Q9BZ72 1349 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 ATP1A2P50993 1020 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 GFPT1Q06210 699 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 TTC13Q8NBP0 860 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 DIS3Q9Y2L1 958 aaKnown RBP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 PALMO75781 387 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 PGBD4Q96DM1 585 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 ASIC4Q96FT7 647 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 POLR3CQ9BUI4 534 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 VPS33BQ9H267 617 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 DACT2Q5SW24 774 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 TRIM72Q6ZMU5 477 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 GMCL1P1Q8NEA9 526 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 PPP1R13LQ8WUF5 828 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 CYP11B2P19099 503 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 RBP5P82980 135 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 DEFB115Q30KQ5 88 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 MOXD1Q6UVY6 613 aa12.34□□□□□ -0.43
SYNE1-204ENST00000367248 ZNF564Q8TBZ8 553 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 PRMT7Q9NVM4 692 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-204ENST00000367248 NLRP11P59045 1033 aaKnown RBP12.33□□□□□ -0.43
SYNE1-204ENST00000367248 FAM163AQ96GL9 167 aaPredicted RBP12.33□□□□□ -0.43
SYNE1-204ENST00000367248 ZC3H4Q9UPT8 1303 aaKnown RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 PPP1R12AO14974 1030 aaPredicted RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 NDUFAF2Q8N183 169 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 RNF10Q8N5U6 811 aaKnown RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 SAMD3Q8N6K7 520 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 DPF2Q92785 391 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 CFAP36Q96G28 342 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 IDI2Q9BXS1 227 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 SLC4A7Q9Y6M7 1214 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 C17orf102A2RUQ5 167 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 TJP3O95049 919 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 FTLP02792 175 aaPredicted RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 PTF1AQ7RTS3 328 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 VCAM1P19320 739 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 MSH2P43246 934 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 SZRD1Q7Z422 152 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 ARRDC4Q8NCT1 418 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 L3MBTL3Q96JM7 780 aaPredicted RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 HEMGNQ9BXL5 484 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 MROH8Q9H579 483 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 TMEM39AQ9NV64 488 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 DNAJC17Q9NVM6 304 aaKnown RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 ADGRG1Q9Y653 693 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 DEPDC5O75140 1603 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 TAL1P17542 331 aaPredicted RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 SHMT1P34896 483 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 ARHGAP25P42331 645 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 CCDC144BQ3MJ40 725 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 GLRA4Q5JXX5 417 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 HASPINQ8TF76 798 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 CALR3Q96L12 384 aaKnown RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 TCF7P36402 384 aaPredicted RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 NSUN2Q08J23 767 aaKnown RBP eCLIP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 SNRNP35Q16560 246 aaKnown RBP12.33□□□□□ -0.44
SYNE1-204ENST00000367248 IFT43Q96FT9 208 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 SYNGAP1Q96PV0 1343 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 DOLKQ9UPQ8 538 aa12.33□□□□□ -0.44
SYNE1-204ENST00000367248 ASMTLO95671 621 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 ATP11AP98196 1134 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 NUDT18Q6ZVK8 323 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 AFF4Q9UHB7 1163 aaKnown RBP12.32□□□□□ -0.44
SYNE1-204ENST00000367248 CCDC151A5D8V7 595 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 RRN3P2A6NIE6 340 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 ACTR2P61160 394 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 DHX40Q8IX18 779 aaKnown RBP12.32□□□□□ -0.44
SYNE1-204ENST00000367248 WNT10BO00744 389 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 ZC3H11AO75152 810 aaKnown RBP eCLIP12.32□□□□□ -0.44
SYNE1-204ENST00000367248 MYBL1P10243 752 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 FAM71BQ8TC56 605 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 RNF25Q96BH1 459 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-204ENST00000367248 TMEM169Q96HH4 297 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 SENP6Q9GZR1 1112 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-204ENST00000367248 PDCD2LQ9BRP1 358 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 REREQ9P2R6 1566 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 TCRBV5S4A2TA0A5A2 114 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 GPC4O75487 556 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 FMR1Q06787 632 aaKnown RBP eCLIP12.32□□□□□ -0.44
SYNE1-204ENST00000367248 STILQ15468 1287 aa12.32□□□□□ -0.44
SYNE1-204ENST00000367248 FAM102AQ5T9C2 384 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-204ENST00000367248 KCTD16Q68DU8 428 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms