RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CEP250Q9BV73 2442 aa15.45■□□□□ 0.06
VPS29-201ENST00000360579 SPTLC1O15269 473 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 SPATA31D3P0C874 917 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 MYBP10242 640 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 GALNT17Q6IS24 598 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 SPATA31D4Q6ZUB0 917 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 OTUD6AQ7L8S5 288 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 BLIDQ8IZY5 108 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 GPR161Q8N6U8 529 aaKnown RBP15.44■□□□□ 0.06
VPS29-201ENST00000360579 FAM20AQ96MK3 541 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 JAKMIP1Q96N16 626 aaKnown RBP15.44■□□□□ 0.06
VPS29-201ENST00000360579 AGXT2Q9BYV1 514 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 BCO2Q9BYV7 579 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 SLKQ9H2G2 1235 aaPredicted RBP15.44■□□□□ 0.06
VPS29-201ENST00000360579 FBXO4Q9UKT5 387 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 GIT1Q9Y2X7 761 aa15.44■□□□□ 0.06
VPS29-201ENST00000360579 ZMYND10O75800 440 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 CPA1P15085 419 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 FSHRP23945 695 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 MAGEA9P43362 315 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 SCNN1GP51170 649 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 MXD4Q14582 209 aaPredicted RBP15.43■□□□□ 0.06
VPS29-201ENST00000360579 EMC2Q15006 297 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 FUT10Q6P4F1 479 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 LILRA6Q6PI73 481 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 MTSS1LQ765P7 747 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 FERMT3Q86UX7 667 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 SUMF1Q8NBK3 374 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 DAGLBQ8NCG7 672 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 KCNB2Q92953 911 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 EIF2AQ9BY44 585 aaKnown RBP15.43■□□□□ 0.06
VPS29-201ENST00000360579 FOXQ1Q9C009 403 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 TRIM6Q9C030 488 aaPredicted RBP15.43■□□□□ 0.06
VPS29-201ENST00000360579 CSRNP2Q9H175 543 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 ADAM28Q9UKQ2 775 aa15.43■□□□□ 0.06
VPS29-201ENST00000360579 ZMYM2Q9UBW7 1377 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 KANSL1LA0AUZ9 987 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 EML1O00423 815 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 LAMTOR5O43504 91 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 TSPAN1O60635 241 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 HNRNPA1P09651 372 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS29-201ENST00000360579 RPS6KB1P23443 525 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 YWHABP31946 246 aaKnown RBP15.42■□□□□ 0.06
VPS29-201ENST00000360579 PTENP60484 403 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 PFKPQ01813 784 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 PRKCQQ04759 706 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 POU5F1BQ06416 359 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 SSRP1Q08945 709 aaKnown RBP15.42■□□□□ 0.06
VPS29-201ENST00000360579 TFDP1Q14186 410 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 KRT25Q7Z3Z0 450 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 C4orf19Q8IY42 314 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 SECISBP2LQ93073 1101 aaKnown RBP15.42■□□□□ 0.06
VPS29-201ENST00000360579 ZFP42Q96MM3 310 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 OSBPL6Q9BZF3 934 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 VAV3Q9UKW4 847 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 CDH7Q9ULB5 785 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 EPG5Q9HCE0 2579 aa15.42■□□□□ 0.06
VPS29-201ENST00000360579 SF3B1O75533 1304 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS29-201ENST00000360579 INO80B-WBP1J3KQ70 363 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 M0R2N6 131 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 CDC45O75419 566 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 TADA2AO75478 443 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 DEXIO95424 95 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 GLULP15104 373 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 GCFC2P16383 781 aaKnown RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 PSMA5P28066 241 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 PDIA3P30101 505 aaKnown RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 EVCP57679 992 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 GPC5P78333 572 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 CCT2P78371 535 aaKnown RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 GRIK3Q13003 919 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 EPHA7Q15375 998 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 RSPO4Q2I0M5 234 aaPredicted RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 VARS2Q5ST30 1063 aaKnown RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 LIN9Q5TKA1 542 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 RSPO2Q6UXX9 243 aaPredicted RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 IFNLR1Q8IU57 520 aaPredicted RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 MAML2Q8IZL2 1156 aaPredicted RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 DCLK2Q8N568 766 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 ATRIPQ8WXE1 791 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 B3GALT6Q96L58 329 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 MTRQ99707 1265 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 LXNQ9BS40 222 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 DDX23Q9BUQ8 820 aaKnown RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 GPR62Q9BZJ7 368 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 KCNMB3Q9NPA1 279 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 SPATA6Q9NWH7 488 aaPredicted RBP15.41■□□□□ 0.06
VPS29-201ENST00000360579 MIOSQ9NXC5 875 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 NCDNQ9UBB6 729 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 FBXW11Q9UKB1 542 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 HES2Q9Y543 173 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 PCDHGA2Q9Y5H1 932 aa15.41■□□□□ 0.06
VPS29-201ENST00000360579 POTEMA6NI47 508 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 F8W810 466 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 TBX3O15119 743 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 SLC37A4O43826 429 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 XYLBO75191 536 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 HOXA9P31269 272 aa15.4■□□□□ 0.06
VPS29-201ENST00000360579 SNW1Q13573 536 aaKnown RBP15.4■□□□□ 0.06
VPS29-201ENST00000360579 MLF2Q15773 248 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms