RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 CBWD3Q5JTY5 395 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 CBWD5Q5RIA9 395 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 C1orf220Q5T0J3 134 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 RNF180Q86T96 592 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 OR8K1Q8NGG5 319 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 KIAA1524Q8TCG1 905 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 PARD3BQ8TEW8 1205 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 DNAJB3Q8WWF6 145 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 PRIMPOLQ96LW4 560 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 EDEM3Q9BZQ6 932 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 ADAMTS10Q9H324 1103 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 GCNT4Q9P109 453 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 GTF2IRD1Q9UHL9 959 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 CNTNAP2Q9UHC6 1331 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 STX10O60499 249 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 GPR32O75388 356 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 CSDE1O75534 798 aaKnown RBP20.3■□□□□ 0.84
CLN3-204ENST00000357857 HARSP12081 509 aaKnown RBP20.3■□□□□ 0.84
CLN3-204ENST00000357857 PROZP22891 400 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 PON1P27169 355 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 ACOT2P49753 483 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 MCL1Q07820 350 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 PPP3CAQ08209 521 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 TMEM62Q0P6H9 643 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 AMHR2Q16671 573 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 MPZL3Q6UWV2 235 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 ZBTB33Q86T24 672 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 CCDC127Q96BQ5 260 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 DNAJC7Q99615 494 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 NAA15Q9BXJ9 866 aaKnown RBP20.3■□□□□ 0.84
CLN3-204ENST00000357857 GCOM2Q9BZD3 368 aaPredicted RBP20.3■□□□□ 0.84
CLN3-204ENST00000357857 PLCB1Q9NQ66 1216 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 TNFSF13BQ9Y275 285 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 CEP350Q5VT06 3117 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 ABLIM1O14639 778 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 P4HA2O15460 535 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 NOL4O94818 638 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 SLC9A1P19634 815 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 NOLC1Q14978 699 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-204ENST00000357857 TSR1Q2NL82 804 aaKnown RBP20.3■□□□□ 0.84
CLN3-204ENST00000357857 CRELD2Q6UXH1 353 aaPredicted RBP20.3■□□□□ 0.84
CLN3-204ENST00000357857 PTPRHQ9HD43 1115 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 CEP72Q9P209 647 aa20.3■□□□□ 0.84
CLN3-204ENST00000357857 LRRIQ3A6PVS8 624 aaPredicted RBP20.29■□□□□ 0.84
CLN3-204ENST00000357857 TULP1O00294 542 aaPredicted RBP20.29■□□□□ 0.84
CLN3-204ENST00000357857 OGTO15294 1046 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 FECHP22830 423 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 GCLMP48507 274 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 PSMD6Q15008 389 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 ZNF568Q3ZCX4 644 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 FAM47CQ5HY64 1035 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 ZBTB41Q5SVQ8 909 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 CACNA2D4Q7Z3S7 1137 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 NME8Q8N427 588 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 GANQ9H2C0 597 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 WBP1LQ9NX94 342 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 GINS2Q9Y248 185 aa20.29■□□□□ 0.84
CLN3-204ENST00000357857 ARHGAP6O43182 974 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 ERLIN2O94905 339 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 ACTN1P12814 892 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 CETN1Q12798 172 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 EEF1DP3Q658K8 133 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 DPY19L2P1Q6NXN4 242 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 TAF2Q6P1X5 1199 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 ZNF710Q8N1W2 664 aa20.28■□□□□ 0.84
CLN3-204ENST00000357857 RBAKQ9NYW8 714 aaPredicted RBP20.28■□□□□ 0.84
CLN3-204ENST00000357857 PMM2O15305 246 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 FAM189A1O60320 539 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 CABYRO75952 493 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 DLATP10515 647 aaKnown RBP20.27■□□□□ 0.84
CLN3-204ENST00000357857 GTF2H1P32780 548 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 KCNJ6P48051 423 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 MXI1P50539 228 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 POLR2FP61218 127 aaKnown RBP20.27■□□□□ 0.84
CLN3-204ENST00000357857 APBA1Q02410 837 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 KLHDC7AQ5VTJ3 777 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 LHX8Q68G74 356 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 GDF6Q6KF10 455 aaPredicted RBP20.27■□□□□ 0.84
CLN3-204ENST00000357857 SESTD1Q86VW0 696 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 BAP1Q92560 729 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 OSMRQ99650 979 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 TMEM117Q9H0C3 514 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 CDHR5Q9HBB8 845 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 ANK1P16157 1881 aa20.27■□□□□ 0.84
CLN3-204ENST00000357857 TSPAN1O60635 241 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 ARF4P18085 180 aaPredicted RBP20.27■□□□□ 0.83
CLN3-204ENST00000357857 TRIM65Q6PJ69 517 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 CDR2LQ86X02 465 aaPredicted RBP20.27■□□□□ 0.83
CLN3-204ENST00000357857 TMTC1Q8IUR5 882 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 C17orf53Q8N3J3 647 aaPredicted RBP20.27■□□□□ 0.83
CLN3-204ENST00000357857 SH3TC2Q8TF17 1288 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 CPB2Q96IY4 423 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 FNBP1Q96RU3 617 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 POP1Q99575 1024 aaKnown RBP20.27■□□□□ 0.83
CLN3-204ENST00000357857 INTS2Q9H0H0 1204 aaKnown RBP20.27■□□□□ 0.83
CLN3-204ENST00000357857 CDT1Q9H211 546 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 PDZD7Q9H5P4 517 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 TMEM8AQ9HCN3 771 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 SIX2Q9NPC8 291 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 NLRC4Q9NPP4 1024 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms