RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 ANKRD40Q6AI12 368 aa12.48□□□□□ -0.41
COL9A1-202ENST00000357250 TBC1D1Q86TI0 1168 aaPredicted RBP12.48□□□□□ -0.41
COL9A1-202ENST00000357250 RYBPQ8N488 228 aaPredicted RBP12.48□□□□□ -0.41
COL9A1-202ENST00000357250 ATL2Q8NHH9 583 aa12.48□□□□□ -0.41
COL9A1-202ENST00000357250 LRRC37BQ96QE4 947 aa12.48□□□□□ -0.41
COL9A1-202ENST00000357250 KIFC3Q9BVG8 833 aa12.48□□□□□ -0.41
COL9A1-202ENST00000357250 EIF2AQ9BY44 585 aaKnown RBP12.48□□□□□ -0.41
COL9A1-202ENST00000357250 DDX47Q9H0S4 455 aaKnown RBP12.48□□□□□ -0.41
COL9A1-202ENST00000357250 MRGBPQ9NV56 204 aa12.48□□□□□ -0.41
COL9A1-202ENST00000357250 PITPNM2Q9BZ72 1349 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 RICTORQ6R327 1708 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 P4HA2O15460 535 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 CCDC22O60826 627 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 DGAT1O75907 488 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 FDPSP14324 419 aaKnown RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 HEATR6Q6AI08 1181 aaKnown RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 PTF1AQ7RTS3 328 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 AGO2Q9UKV8 859 aaKnown RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 SALL3Q9BXA9 1300 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 NVLO15381 856 aaKnown RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 AGTP01019 485 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 KRT14P02533 472 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 CDO1Q16878 200 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 USP49Q70CQ1 688 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 TRMT10CQ7L0Y3 403 aaKnown RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 SYN2Q92777 582 aaPredicted RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 UBN1Q9NPG3 1134 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 RBAKQ9NYW8 714 aaPredicted RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 SLC9A2Q9UBY0 812 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 ZFP69BQ9UJL9 534 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 EMSYQ7Z589 1322 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 WDR91A4D1P6 747 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 SERPINB4P48594 390 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 ZBTB17Q13105 803 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 NR1I3Q14994 352 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 NLRP14Q86W24 1093 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 DCLK2Q8N568 766 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 TRPV6Q9H1D0 765 aa12.47□□□□□ -0.41
COL9A1-202ENST00000357250 POLR3FQ9H1D9 316 aaPredicted RBP12.47□□□□□ -0.41
COL9A1-202ENST00000357250 ASB14A6NK59 587 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 H3BRJ5 948 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 RPSAP08865 295 aaKnown RBP12.46□□□□□ -0.41
COL9A1-202ENST00000357250 ROR1Q01973 937 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 PDE1CQ14123 709 aaPredicted RBP12.46□□□□□ -0.41
COL9A1-202ENST00000357250 GLYCTKQ8IVS8 523 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 RNPC3Q96LT9 517 aaKnown RBP12.46□□□□□ -0.41
COL9A1-202ENST00000357250 SLC4A9Q96Q91 983 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 SMG5Q9UPR3 1016 aaKnown RBP12.46□□□□□ -0.41
COL9A1-202ENST00000357250 A0A0G2JND7 137 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 CASP2P42575 452 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 EFHC2Q5JST6 749 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 XRRA1Q6P2D8 792 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 ALKBH8Q96BT7 664 aaKnown RBP12.46□□□□□ -0.41
COL9A1-202ENST00000357250 WRNIP1Q96S55 665 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 TPX2Q9ULW0 747 aaKnown RBP12.46□□□□□ -0.41
COL9A1-202ENST00000357250 INPP1P49441 399 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 CCZ1BP86790 482 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 CCZ1P86791 482 aaPredicted RBP12.46□□□□□ -0.41
COL9A1-202ENST00000357250 XKR3Q5GH77 459 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 STRIP1Q5VSL9 837 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 SWSAP1Q6NVH7 229 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 HHIPL2Q6UWX4 724 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 RPAINQ86UA6 219 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 TTC8Q8TAM2 541 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 FGD4Q96M96 766 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 HEMGNQ9BXL5 484 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 APEX2Q9UBZ4 518 aa12.46□□□□□ -0.41
COL9A1-202ENST00000357250 GOLGA8MH3BSY2 632 aa12.46□□□□□ -0.42
COL9A1-202ENST00000357250 EIF3DO15371 548 aaKnown RBP eCLIP12.46□□□□□ -0.42
COL9A1-202ENST00000357250 MARK3P27448 753 aa12.46□□□□□ -0.42
COL9A1-202ENST00000357250 TMTC4Q5T4D3 741 aa12.46□□□□□ -0.42
COL9A1-202ENST00000357250 DAGLAQ9Y4D2 1042 aa12.46□□□□□ -0.42
COL9A1-202ENST00000357250 CFAP69A5D8W1 941 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 M0QYV0 167 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 ATP1A1P05023 1023 aaKnown RBP12.45□□□□□ -0.42
COL9A1-202ENST00000357250 ARFIP2P53365 341 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 MAPRE2Q15555 327 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 LDHDQ86WU2 507 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 RCOR2Q8IZ40 523 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 FSD1LQ9BXM9 530 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 MYOM1P52179 1685 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 MAFGO15525 162 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 IFNA8P32881 189 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 CYP2C19P33261 490 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 GPS1Q13098 491 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 KIAA1755Q5JYT7 1200 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 SLC10A5Q5PT55 438 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 RNF25Q96BH1 459 aaPredicted RBP12.45□□□□□ -0.42
COL9A1-202ENST00000357250 TNIP3Q96KP6 325 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 FAM49AQ9H0Q0 323 aaPredicted RBP12.45□□□□□ -0.42
COL9A1-202ENST00000357250 INTUQ9ULD6 942 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 APOEP02649 317 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 FCER1AP12319 257 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 ITIH2P19823 946 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 IZUMO3Q5VZ72 239 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 RWDD4Q6NW29 188 aaKnown RBP12.45□□□□□ -0.42
COL9A1-202ENST00000357250 HSPA9P38646 679 aaKnown RBP12.45□□□□□ -0.42
COL9A1-202ENST00000357250 CASP7P55210 303 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 GRAMD1BQ3KR37 738 aa12.45□□□□□ -0.42
COL9A1-202ENST00000357250 ZNF394Q53GI3 561 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms