RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 GSPT1P15170 499 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 BBS9Q3SYG4 887 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 RBBP8Q99708 897 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 CD248Q9HCU0 757 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PARP3Q9Y6F1 533 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 MYO18AQ92614 2054 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 TYW5A2RUC4 315 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 DCAF8L1A6NGE4 600 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 FTCDO95954 541 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 C1orf228Q6PIY5 440 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 TSPAN17Q96FV3 270 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PHF23Q9BUL5 403 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 FRMD8P1Q9BZ68 369 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 NOS1P29475 1434 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PRPSAP2O60256 369 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 LRRC36Q1X8D7 754 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 NAALADL2Q58DX5 795 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 C8orf58Q8NAV2 365 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 FANCBQ8NB91 859 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 RAPGEF5Q92565 580 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 VPS33BQ9H267 617 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 MCM8Q9UJA3 840 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 ITPRIPL1Q6GPH6 555 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 NEK10Q6ZWH5 1172 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 KCND1Q9NSA2 647 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 ABCA8O94911 1581 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PKP1Q13835 747 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 CCDC85BQ15834 202 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 CHST3Q7LGC8 479 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PRG4Q92954 1404 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 CAMSAP1Q5T5Y3 1602 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 ATP8B3O60423 1300 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 CCDC157Q569K6 752 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 BBS7Q8IWZ6 715 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 WDR36Q8NI36 951 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PHF2O75151 1096 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 KCNQ4P56696 695 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 TRIP4Q15650 581 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 TAF2Q6P1X5 1199 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 DHX40Q8IX18 779 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 ZCCHC7Q8N3Z6 543 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 SNRNP27Q8WVK2 155 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PLIN2Q99541 437 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 WDR91A4D1P6 747 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 MMP1P03956 469 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 ZNF12P17014 697 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 ELMSAN1Q6PJG2 1045 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 CCDC137Q6PK04 289 aaKnown RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 BBS2Q9BXC9 721 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 LMBR1LQ6UX01 489 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 FAM133AQ8N9E0 248 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 DDX25Q9UHL0 483 aaKnown RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 SF3B1O75533 1304 aaKnown RBP eCLIP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 A0A1W2PQJ5 194 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 LRRC31Q6UY01 552 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 MYRFQ9Y2G1 1151 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 GPC5P78333 572 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 ZBTB8OSQ8IWT0 167 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 POTECB2RU33 542 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 NR1H2P55055 460 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 CLEC4FQ8N1N0 589 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 PDCD6IPQ8WUM4 868 aaKnown RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 ATXN2LQ8WWM7 1075 aaKnown RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 C6orf203Q9P0P8 240 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 CDYLQ9Y232 598 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 PDIA3P30101 505 aaKnown RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 SLC34A1Q06495 639 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 C1DQ13901 141 aaKnown RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 CCDC142Q17RM4 750 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 ANKRD36BP1Q96IX9 119 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 A0A1B0GTH6 734 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 K7ENM7 598 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 SNPHO15079 494 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 THOC7Q6I9Y2 204 aaKnown RBP13.29□□□□□ -0.28
COL6A3-203ENST00000353578 KRT35Q92764 455 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 HPS1Q92902 700 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 CROCCQ5TZA2 2017 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 BAIAP3O94812 1187 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 STAT5AP42229 794 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 STAT5BP51692 787 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 FAM45AQ8TCE6 357 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 WDR24Q96S15 920 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 SERPINB13Q9UIV8 391 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 PRELID1Q9Y255 219 aa13.29□□□□□ -0.28
COL6A3-203ENST00000353578 UBTFL6P0CB48 400 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-203ENST00000353578 TRIP13Q15645 432 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-203ENST00000353578 SETD9Q8NE22 299 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 CENPTQ96BT3 561 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 ZBTB22O15209 634 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 MYO1DO94832 1006 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 MMRN1Q13201 1228 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 KIAA1755Q5JYT7 1200 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 MYH1P12882 1939 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 MYH2Q9UKX2 1941 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 MYH4Q9Y623 1939 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 GNB5O14775 395 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 USP1O94782 785 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 CYP2J2P51589 502 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 XRCC4Q13426 336 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 RSBN1Q5VWQ0 802 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms