RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SLC20A1Q8WUM9 679 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 GRAMD1AQ96CP6 724 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 LRRC37BQ96QE4 947 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 MIPEPQ99797 713 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 STK33Q9BYT3 514 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 DHX36Q9H2U1 1008 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 RIOX1Q9H6W3 641 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 SEPT11Q9NVA2 429 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 EURLQ9NYK6 297 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 SAP30BPQ9UHR5 308 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 LGALS13Q9UHV8 139 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 GRID1Q9ULK0 1009 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 PCDHA12Q9UN75 941 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 NAALADL1Q9UQQ1 740 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 STARD13Q9Y3M8 1113 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 FRMPD2Q68DX3 1309 aaPredicted RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 KDM3AQ9Y4C1 1321 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 GTPBP10A4D1E9 387 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 MIF4GDA9UHW6 222 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 RSPH10B2B2RC85 870 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 PDXKO00764 312 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 TRAFD1O14545 582 aaPredicted RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 PLSCR1O15162 318 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 ECE2O60344 883 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 KRT18P05783 430 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 RSPH10BP0C881 870 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 COMTP21964 271 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 IVDP26440 423 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 ATP5DP30049 168 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 HADHBP55084 474 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 STRN3Q13033 797 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 RCN2Q14257 317 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 SETDB1Q15047 1291 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 DSTYKQ6XUX3 929 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 ARHGAP22Q7Z5H3 698 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 SLC13A5Q86YT5 568 aaPredicted RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 UBL4BQ8N7F7 174 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 SH3TC2Q8TF17 1288 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 CD101Q93033 1021 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 LBHD1Q9BQE6 289 aaPredicted RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 REEP2Q9BRK0 252 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 UBE2OQ9C0C9 1292 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 OCEL1Q9H607 264 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 TLE6Q9H808 572 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 DNAJC18Q9H819 358 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 NINJ2Q9NZG7 142 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 LMCD1Q9NZU5 365 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 PHTF1Q9UMS5 762 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 LRCH1Q9Y2L9 728 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 PCDHB13Q9Y5F0 798 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 USH1CQ9Y6N9 552 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 DDX60LQ5H9U9 1706 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 SLC16A3O15427 465 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 MAGEB2O15479 319 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 PPP1R11O60927 126 aaPredicted RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 ATP9AO75110 1047 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 TCEA3O75764 348 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CAMTA2O94983 1202 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 ASMTLO95671 621 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 ECEL1O95672 775 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 GGPS1O95749 300 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 POLD1P28340 1107 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 KRT17Q04695 432 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CALCOCO2Q13137 446 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CUL3Q13618 768 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CBWD6Q4V339 395 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CBWD3Q5JTY5 395 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CBWD5Q5RIA9 395 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 RBM26Q5T8P6 1007 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 SNX30Q5VWJ9 437 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 C4orf50Q6ZRC1 276 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CCNJLQ8IV13 435 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 C12orf50Q8NA57 414 aaPredicted RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 ATL2Q8NHH9 583 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 LRRC8CQ8TDW0 803 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 C10orf82Q8WW14 230 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CELF1Q92879 486 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 CEP95Q96GE4 821 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 RBM41Q96IZ5 413 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 FGD4Q96M96 766 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 FAM210AQ96ND0 272 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 TRAPPC9Q96Q05 1148 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 TAOK3Q9H2K8 898 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 DCLRE1BQ9H816 532 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 NKIRAS1Q9NYS0 192 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 WHRNQ9P202 907 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CTTNBP2NLQ9P2B4 639 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 ZMYM2Q9UBW7 1377 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 MEIS1O00470 390 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 MAPK13O15264 365 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 TGFB1I1O43294 461 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 ATMINO43313 823 aaPredicted RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 CALUO43852 315 aaPredicted RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 SPAG7O75391 227 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 KRT36O76013 467 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 DLATP10515 647 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 PYGBP11216 843 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 FGFR1P11362 822 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 TNFAIP3P21580 790 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 SMARCA1P28370 1054 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms