RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 BRD1O95696 1058 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 PBX3P40426 434 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 PLCB3Q01970 1234 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 CACNB1Q02641 598 aaPredicted RBP16.96■□□□□ 0.31
VAPA-201ENST00000340541 DMP1Q13316 513 aaPredicted RBP16.96■□□□□ 0.31
VAPA-201ENST00000340541 PRPF4BQ13523 1007 aaKnown RBP16.96■□□□□ 0.31
VAPA-201ENST00000340541 STK38Q15208 465 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 NOMO2Q5JPE7 1267 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 NT5DC1Q5TFE4 455 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 KCNT2Q6UVM3 1135 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 ADGRD2Q7Z7M1 963 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 GPBP1Q86WP2 473 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 RNF135Q8IUD6 432 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 SPIRE2Q8WWL2 714 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 REEP2Q9BRK0 252 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 NXF3Q9H4D5 531 aaKnown RBP16.96■□□□□ 0.31
VAPA-201ENST00000340541 INPP5FQ9Y2H2 1132 aa16.96■□□□□ 0.31
VAPA-201ENST00000340541 PHLPP2Q6ZVD8 1323 aa16.96■□□□□ 0.3
VAPA-201ENST00000340541 A0A087X0B3 334 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 PPP6R2O75170 966 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 NPTXRO95502 500 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 ITGA4P13612 1032 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 PLS3P13797 630 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 DDIT3P35638 169 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 DHX8Q14562 1220 aaKnown RBP16.95■□□□□ 0.3
VAPA-201ENST00000340541 CBX2Q14781 532 aaPredicted RBP16.95■□□□□ 0.3
VAPA-201ENST00000340541 FOXD4L6Q3SYB3 417 aaPredicted RBP16.95■□□□□ 0.3
VAPA-201ENST00000340541 EEF1DP3Q658K8 133 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 FOXD4L3Q6VB84 417 aaPredicted RBP16.95■□□□□ 0.3
VAPA-201ENST00000340541 TMEM184AQ6ZMB5 413 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 THNSL1Q8IYQ7 743 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 SLC39A11Q8N1S5 342 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 RASSF8Q8NHQ8 419 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 LARP4BQ92615 738 aaKnown RBP16.95■□□□□ 0.3
VAPA-201ENST00000340541 MFSD14AQ96MC6 490 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 ZNF558Q96NG5 402 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 TMEM134Q9H6X4 195 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 NRDE2Q9H7Z3 1164 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 KMT5AQ9NQR1 393 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 STK17AQ9UEE5 414 aa16.95■□□□□ 0.3
VAPA-201ENST00000340541 LOC730098B7Z3J9 87 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 K7ERI5 159 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 FSCN2O14926 492 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 N4BP3O15049 544 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 SLC16A4O15374 487 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 DDHD2O94830 711 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 GLP2RO95838 553 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 SRGAP2BP0DMP2 458 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 LIG1P18858 919 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 PPM1AP35813 382 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 ZNF131P52739 623 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 BCAR1P56945 870 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 GIT2Q14161 759 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 DUSP6Q16828 381 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 AXDND1Q5T1B0 1012 aaPredicted RBP16.94■□□□□ 0.3
VAPA-201ENST00000340541 BMP8AQ7Z5Y6 402 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 RBM23Q86U06 439 aaKnown RBP16.94■□□□□ 0.3
VAPA-201ENST00000340541 ZNF280BQ86YH2 543 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 TMEM161BQ8NDZ6 487 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 GSTCDQ8NEC7 633 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 MRPS27Q92552 414 aaKnown RBP16.94■□□□□ 0.3
VAPA-201ENST00000340541 EDAQ92838 391 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 ZFP42Q96MM3 310 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 NGRNQ9NPE2 291 aaKnown RBP16.94■□□□□ 0.3
VAPA-201ENST00000340541 UBN1Q9NPG3 1134 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 CCDC39Q9UFE4 941 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 ODF2LQ9ULJ1 636 aa16.94■□□□□ 0.3
VAPA-201ENST00000340541 RBM19Q9Y4C8 960 aaKnown RBP16.94■□□□□ 0.3
VAPA-201ENST00000340541 C5orf42Q9H799 3197 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 CARNS1A5YM72 827 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 ARL5CA6NH57 179 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 AKAP5P24588 427 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 TXLNAP40222 546 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 MLH1P40692 756 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 ERVFC1P60507 584 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 KRT17Q04695 432 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 DNM1Q05193 864 aaKnown RBP16.93■□□□□ 0.3
VAPA-201ENST00000340541 ATF7IP2Q5U623 682 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 ATL3Q6DD88 541 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 TMEM173Q86WV6 379 aaPredicted RBP16.93■□□□□ 0.3
VAPA-201ENST00000340541 KCNN1Q92952 543 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 GAD1Q99259 594 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 APOL6Q9BWW8 343 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 PHF7Q9BWX1 381 aaPredicted RBP16.93■□□□□ 0.3
VAPA-201ENST00000340541 TRIM6Q9C030 488 aaPredicted RBP16.93■□□□□ 0.3
VAPA-201ENST00000340541 PTPRHQ9HD43 1115 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 MIOSQ9NXC5 875 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 SPG21Q9NZD8 308 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 DNAJB4Q9UDY4 337 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 DAXXQ9UER7 740 aaPredicted RBP16.93■□□□□ 0.3
VAPA-201ENST00000340541 TNFSF13BQ9Y275 285 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 GIT1Q9Y2X7 761 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 PCDHGC5Q9Y5F6 944 aa16.93■□□□□ 0.3
VAPA-201ENST00000340541 TDRD15B5MCY1 1934 aaKnown RBP16.93■□□□□ 0.3
VAPA-201ENST00000340541 MUC6Q6W4X9 2439 aa16.92■□□□□ 0.3
VAPA-201ENST00000340541 ZMYM2Q9UBW7 1377 aa16.92■□□□□ 0.3
VAPA-201ENST00000340541 NT5C1B-RDH14C9J2C7 533 aa16.92■□□□□ 0.3
VAPA-201ENST00000340541 CUTAO60888 179 aa16.92■□□□□ 0.3
VAPA-201ENST00000340541 ZC3H11AO75152 810 aaKnown RBP eCLIP16.92■□□□□ 0.37e-18■■■□□ 17
VAPA-201ENST00000340541 CSPG5O95196 566 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms