RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SERPINB3P29508 390 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 PDCD2Q16342 344 aaPredicted RBP9.21□□□□□ -0.93
RTN3-202ENST00000339997 PTGISQ16647 500 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 NUP93Q8N1F7 819 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 RFFLQ8WZ73 363 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 TRIM11Q96F44 468 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 POLR3CQ9BUI4 534 aaPredicted RBP9.21□□□□□ -0.93
RTN3-202ENST00000339997 ZNF609O15014 1411 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 A0A087X0T9 212 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 M0QZ92 97 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 FAM228BP0C875 321 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 PCP11498 1178 aaKnown RBP9.21□□□□□ -0.93
RTN3-202ENST00000339997 HSD17B3P37058 310 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 QRICH1Q2TAL8 776 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 PACS2Q86VP3 889 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 MCF2L2Q86YR7 1114 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 MYCBPAPQ8TBZ2 947 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 EPS8L3Q8TE67 593 aaKnown RBP9.21□□□□□ -0.93
RTN3-202ENST00000339997 CCDC17Q96LX7 622 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 BRIP1Q9BX63 1249 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 NBPF3Q9H094 633 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 SIK2Q9H0K1 926 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 SNX25Q9H3E2 840 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 TMEM51Q9NW97 253 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 HAO1Q9UJM8 370 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 TUBE1Q9UJT0 475 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 STRIP2Q9ULQ0 834 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 RICTORQ6R327 1708 aa9.21□□□□□ -0.93
RTN3-202ENST00000339997 NPR1P16066 1061 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 PCYT1AP49585 367 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 ACOT2P49753 483 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 SH3BGRP55822 239 aaPredicted RBP9.21□□□□□ -0.94
RTN3-202ENST00000339997 CAPRIN1Q14444 709 aaKnown RBP9.21□□□□□ -0.94
RTN3-202ENST00000339997 BARGINQ6ZT62 677 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 FBXL13Q8NEE6 735 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 IGDCC4Q8TDY8 1250 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 PI4K2AQ9BTU6 479 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 MKNK1Q9BUB5 465 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 DRC3Q9H069 523 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 ASCC2Q9H1I8 757 aaPredicted RBP9.21□□□□□ -0.94
RTN3-202ENST00000339997 IL1RL2Q9HB29 575 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 RAVER2Q9HCJ3 691 aaKnown RBP9.21□□□□□ -0.94
RTN3-202ENST00000339997 DDX28Q9NUL7 540 aaKnown RBP9.21□□□□□ -0.94
RTN3-202ENST00000339997 CHMP2BQ9UQN3 213 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 WDR17Q8IZU2 1322 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 ROBO2Q9HCK4 1378 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 IPO5O00410 1097 aaKnown RBP9.21□□□□□ -0.94
RTN3-202ENST00000339997 SERPINB2P05120 415 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 SRGNP10124 158 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 MLH1P40692 756 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 ATG9AQ7Z3C6 839 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 DNAJC9Q8WXX5 260 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 KLC2Q9H0B6 622 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 L2HGDHQ9H9P8 463 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 ATG3Q9NT62 314 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 MINPP1Q9UNW1 487 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 ORC6Q9Y5N6 252 aa9.21□□□□□ -0.94
RTN3-202ENST00000339997 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 CCT8L1PA6NM43 557 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 NBPF26B4DH59 902 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ZBTB5O15062 677 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ANP32DO95626 131 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 FAM107AO95990 144 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 AKR1B1P15121 316 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 GNA15P30679 374 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 SOX5P35711 763 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CDH6P55285 790 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 COPS2P61201 443 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CNGA3Q16281 694 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 FASTKD1Q53R41 847 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 FAXCQ5TGI0 409 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 LRRC8EQ6NSJ5 796 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 RAB44Q7Z6P3 723 aaPredicted RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 JAMLQ86YT9 394 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 NBPF15Q8N660 670 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 OR6P1Q8NGX9 317 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 THAP11Q96EK4 314 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CEP19Q96LK0 163 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 SH3GL3Q99963 347 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ZNF341Q9BYN7 854 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 DHX35Q9H5Z1 703 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 SCHIP1Q9P0W5 487 aaPredicted RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 PVALEFA0A1B0GWK0 134 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ALDH1B1P30837 517 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 BCAR1P56945 870 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 AP1B1Q10567 949 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 SLC30A10Q6XR72 485 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 SIX6OS1Q8N1H7 587 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 TMEM35BQ8NCS4 154 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CASKIN2Q8WXE0 1202 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 MTRQ99707 1265 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 TUBB6Q9BUF5 446 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ADNPQ9H2P0 1102 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 HACD3Q9P035 362 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 URB1O60287 2271 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 A0A1W2PQC6 194 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 PALM3A6NDB9 673 aaPredicted RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 ADCY3O60266 1144 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 MYBP10242 640 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms