RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CCDC77Q9BR77 488 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 ERP44Q9BS26 406 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 CALN1Q9BXU9 219 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 SAYSD1Q9NPB0 183 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 AIPL1Q9NZN9 384 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 ADAM22Q9P0K1 906 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 CPSF2Q9P2I0 782 aaKnown RBP12.78□□□□□ -0.36
USP1-201ENST00000339950 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.78□□□□□ -0.36
USP1-201ENST00000339950 MYH15Q9Y2K3 1946 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 INO80B-WBP1J3KQ70 363 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 BRAFP15056 766 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 SNRNP48Q6IEG0 339 aaKnown RBP12.78□□□□□ -0.36
USP1-201ENST00000339950 DLK2Q6UY11 383 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 ZBTB45Q96K62 511 aaPredicted RBP12.78□□□□□ -0.36
USP1-201ENST00000339950 INO80BQ9C086 356 aaPredicted RBP12.78□□□□□ -0.36
USP1-201ENST00000339950 KCNMB3Q9NPA1 279 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 PICK1Q9NRD5 415 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 IKBKGQ9Y6K9 419 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 N4BP2Q86UW6 1770 aaPredicted RBP12.77□□□□□ -0.36
USP1-201ENST00000339950 ANKRD63C9JTQ0 380 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 SREBF1P36956 1147 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 CDK17Q00537 523 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 BBS9Q3SYG4 887 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 SULF1Q8IWU6 871 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 KLHL29Q96CT2 875 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 ATG4CQ96DT6 458 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 FAM167BQ9BTA0 163 aa12.77□□□□□ -0.36
USP1-201ENST00000339950 NSRP1Q9H0G5 558 aaKnown RBP12.77□□□□□ -0.36
USP1-201ENST00000339950 SAE1Q9UBE0 346 aaPredicted RBP12.77□□□□□ -0.36
USP1-201ENST00000339950 GRAP2O75791 330 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 RRM1P23921 792 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 CNGA1P29973 690 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 HOXD13P35453 343 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 NEDD9Q14511 834 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 KCNT1Q5JUK3 1230 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 NCAPG2Q86XI2 1143 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 ETNPPLQ8TBG4 499 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 WEE2P0C1S8 567 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 RPL21P46778 160 aaKnown RBP12.77□□□□□ -0.37
USP1-201ENST00000339950 SNCBQ16143 134 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 ZCWPW2Q504Y3 356 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 HHATQ5VTY9 493 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 HHIPL2Q6UWX4 724 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 RNF146Q9NTX7 359 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 ZNF70Q9UC06 446 aaPredicted RBP12.77□□□□□ -0.37
USP1-201ENST00000339950 SUFUQ9UMX1 484 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 SLIT2O94813 1529 aa12.77□□□□□ -0.37
USP1-201ENST00000339950 P4HBP07237 508 aaKnown RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 ZSCAN5DPP0CG00 497 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 NUMBP49757 651 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 NOP9Q86U38 636 aaKnown RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 EDEM3Q9BZQ6 932 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 COG5Q9UP83 839 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 KIF1AQ12756 1690 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 KRT1P04264 644 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 ITGB5P18084 799 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 BASP1P80723 227 aaKnown RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 MYO1EQ12965 1108 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 IQCKQ8N0W5 287 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 SNED1Q8TER0 1413 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 TARS2Q9BW92 718 aaKnown RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 APOL6Q9BWW8 343 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 TMBIM4Q9HC24 238 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 CHST7Q9NS84 486 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 PCDHGC5Q9Y5F6 944 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 MRPL42Q9Y6G3 142 aaKnown RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 GAKO14976 1311 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 E2F8A0AVK6 867 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 K7ERI5 159 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 SKAP2O75563 359 aaPredicted RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 CYP3A4P08684 503 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 PRLRP16471 622 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 MXRA7P84157 204 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 CYP4A22Q5TCH4 519 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 STRIP1Q5VSL9 837 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 DDX20Q9UHI6 824 aaKnown RBP12.76□□□□□ -0.37
USP1-201ENST00000339950 EXOC7Q9UPT5 735 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 L3MBTL1Q9Y468 752 aa12.76□□□□□ -0.37
USP1-201ENST00000339950 EXOC1LA0A1B0GW35 172 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 RALAP11233 206 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 CA4P22748 312 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 LIN9Q5TKA1 542 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 ATP8B4Q8TF62 1192 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 CHMP6Q96FZ7 201 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 PRM3Q9NNZ6 103 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 HOMER3Q9NSC5 361 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 KLC4Q9NSK0 619 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 RASA4BC9J798 803 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 PJA2O43164 708 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 RASA4O43374 803 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 UGCGQ16739 394 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 TAOK1Q7L7X3 1001 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 USP37Q86T82 979 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 SLC17A8Q8NDX2 589 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 ZBTB10Q96DT7 871 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 XPO6Q96QU8 1125 aaKnown RBP12.75□□□□□ -0.37
USP1-201ENST00000339950 GDF3Q9NR23 364 aa12.75□□□□□ -0.37
USP1-201ENST00000339950 NOP56O00567 594 aaKnown RBP12.75□□□□□ -0.37
USP1-201ENST00000339950 TLR3O15455 904 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms