RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 CCHCR1Q8TD31 782 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 ZNF483Q8TF39 744 aaPredicted RBP8.45□□□□□ -1.06
VMA21-201ENST00000330374 TBC1D22AQ8WUA7 517 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 RPGRQ92834 1020 aaKnown RBP8.45□□□□□ -1.06
VMA21-201ENST00000330374 KAT5Q92993 513 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 C9orf72Q96LT7 481 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 CREBZFQ9NS37 354 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 SLC5A4Q9NY91 659 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 TISP43B9A030 160 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 EXOC3O60645 756 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 PSMC2P35998 433 aaKnown RBP8.45□□□□□ -1.06
VMA21-201ENST00000330374 MYL7Q01449 175 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 TMED2Q15363 201 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 DAB2IPQ5VWQ8 1189 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 SLC30A5Q8TAD4 765 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 ERMNQ8TAM6 284 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 ERP27Q96DN0 273 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 STK33Q9BYT3 514 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 NKIRAS1Q9NYS0 192 aa8.45□□□□□ -1.06
VMA21-201ENST00000330374 PASKQ96RG2 1323 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 UBAP1LF5GYI3 381 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 TGFB1I1O43294 461 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 UFL1O94874 794 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 COILP38432 576 aaPredicted RBP8.44□□□□□ -1.06
VMA21-201ENST00000330374 KRT17Q04695 432 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 ZNF543Q08ER8 600 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 BNIP1Q12981 228 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 DNAJC3Q13217 504 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 RIPK1Q13546 671 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SLMAPQ14BN4 828 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 QRICH1Q2TAL8 776 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 GRIPAP1Q4V328 841 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 VSTM1Q6UX27 236 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 RNF207Q6ZRF8 634 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 HEMGNQ9BXL5 484 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 PITPNM3Q9BZ71 974 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 MTUS1Q9ULD2 1270 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 RABGAP1Q9Y3P9 1069 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SYNGAP1Q96PV0 1343 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 ZBTB5O15062 677 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 ECEL1O95672 775 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 RARGP13631 454 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 CTHP32929 405 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 NPEPPSP55786 919 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 MGAT5Q09328 741 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 C2CD6Q53TS8 623 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 PHLDB3Q6NSJ2 640 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 MIS18BP1Q6P0N0 1132 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 ZNF804AQ7Z570 1209 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 LINC00116Q8NCU8 138 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 AGPAT1Q99943 283 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 ZSWIM1Q9BR11 485 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SH2D3AQ9BRG2 576 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 TRIM7Q9C029 511 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 FRMD4BQ9Y2L6 1034 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SPATA31C1P0DKV0 1188 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 GCLMP48507 274 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 IRX1P78414 480 aaPredicted RBP8.44□□□□□ -1.06
VMA21-201ENST00000330374 ARHGAP4P98171 946 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SGO2Q562F6 1265 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SULF1Q8IWU6 871 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 DHX38Q92620 1227 aaKnown RBP8.44□□□□□ -1.06
VMA21-201ENST00000330374 BATF3Q9NR55 127 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 PKD2L1Q9P0L9 805 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 KIAA1551Q9HCM1 1747 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 MYH14Q7Z406 1995 aaKnown RBP8.44□□□□□ -1.06
VMA21-201ENST00000330374 PODXLO00592 558 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 MAP3K13O43283 966 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SMNDC1O75940 238 aaKnown RBP eCLIP8.44□□□□□ -1.06
VMA21-201ENST00000330374 STK10O94804 968 aaKnown RBP8.44□□□□□ -1.06
VMA21-201ENST00000330374 ADCY8P40145 1251 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SSR1P43307 286 aaKnown RBP8.44□□□□□ -1.06
VMA21-201ENST00000330374 DLG4P78352 724 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 ECHDC2Q86YB7 292 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 FBF1Q8TES7 1133 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 NAF1Q96HR8 494 aaKnown RBP8.44□□□□□ -1.06
VMA21-201ENST00000330374 MYLK2Q9H1R3 596 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 KCNMB3Q9NPA1 279 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 SLCO1B3Q9NPD5 702 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 INTUQ9ULD6 942 aa8.44□□□□□ -1.06
VMA21-201ENST00000330374 NHSL1Q5SYE7 1610 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 EML1O00423 815 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 RIMBP2O15034 1052 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 CTCFP49711 727 aaPredicted RBP8.43□□□□□ -1.06
VMA21-201ENST00000330374 ZNF131P52739 623 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 RAB15P59190 212 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 RRP1BQ14684 758 aaKnown RBP8.43□□□□□ -1.06
VMA21-201ENST00000330374 PPP2R5EQ16537 467 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 HS2ST1Q7LGA3 356 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 LONP2Q86WA8 852 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 SYT2Q8N9I0 419 aaPredicted RBP8.43□□□□□ -1.06
VMA21-201ENST00000330374 P2RX7Q99572 595 aaKnown RBP8.43□□□□□ -1.06
VMA21-201ENST00000330374 APEX2Q9UBZ4 518 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 PARP2Q9UGN5 583 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 NENFQ9UMX5 172 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 FAM86B1E9PN63 330 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 POC1B-GALNT4F8VUJ3 575 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 SMIM24O75264 130 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 CBX6O95503 412 aa8.43□□□□□ -1.06
VMA21-201ENST00000330374 TTLL1O95922 423 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms