RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MLH1P40692 756 aa16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 PHLDB3Q6NSJ2 640 aa16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 ZC3H14Q6PJT7 736 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 TAS1R1Q7RTX1 841 aa16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 SLC44A3Q8N4M1 653 aa16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 HAS1Q92839 578 aa16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 EIF2AQ9BY44 585 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 NFKBIZQ9BYH8 718 aa16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 WRAP73Q9P2S5 460 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-201ENST00000301897 INO80B-WBP1J3KQ70 363 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 NARSO43776 548 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 LMNAP02545 664 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 SCNN1GP51170 649 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 NCAPH2Q6IBW4 605 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 KCNG4Q8TDN1 519 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 ZNF707Q96C28 371 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 DYDC2Q96IM9 177 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 CCDC43Q96MW1 224 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 AIFM3Q96NN9 605 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 MYADMQ96S97 322 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 PRKD2Q9BZL6 878 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 NT5C3AQ9H0P0 336 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 TBC1D17Q9HA65 648 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 RGL1Q9NZL6 768 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 ADAM28Q9UKQ2 775 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 KCNJ14Q9UNX9 436 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 OTOGLQ3ZCN5 2332 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 STK36Q9NRP7 1315 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 FRYLO94915 3013 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 CEP250Q9BV73 2442 aa16.43■□□□□ 0.22
CCDC88B-201ENST00000301897 KRBA1A5PL33 1030 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 RFPL2O75678 378 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 DGAT1O75907 488 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 LYPLA2O95372 231 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 LAMP2P13473 410 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 GRIK3Q13003 919 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 STK3Q13188 491 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 FUT10Q6P4F1 479 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 SLC27A1Q6PCB7 646 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 TPH2Q8IWU9 490 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 CPB2Q96IY4 423 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 RNF39Q9H2S5 420 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 BMP2KQ9NSY1 1161 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 ANKEF1Q9NU02 776 aa16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 DAXXQ9UER7 740 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-201ENST00000301897 DMXL1Q9Y485 3027 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 TGM5O43548 720 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 MBTD1Q05BQ5 628 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 SPIRE1Q08AE8 756 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 LILRA6Q6PI73 481 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 PIK3AP1Q6ZUJ8 805 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 PALB2Q86YC2 1186 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 RSAD2Q8WXG1 361 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 RIN2Q8WYP3 895 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 WASF1Q92558 559 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 SHDQ96IW2 340 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 ZFP42Q96MM3 310 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 BRMS1Q9HCU9 246 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 XPNPEP1Q9NQW7 623 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 ARHGEF3Q9NR81 526 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 SLC2A4RGQ9NR83 387 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 CA14Q9ULX7 337 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 SIT1Q9Y3P8 196 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 HES2Q9Y543 173 aa16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 SF3B1O75533 1304 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC88B-201ENST00000301897 CACNA1IQ9P0X4 2223 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 ANHXE9PGG2 379 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 TADA2AO75478 443 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 SLITRK3O94933 977 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 HNRNPA1P09651 372 aaKnown RBP eCLIP16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 SPATA31D3P0C874 917 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 ARF4P18085 180 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 CYP4A11Q02928 519 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 HTR4Q13639 388 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 CTTNQ14247 550 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 AMHR2Q16671 573 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 SPATA31D4Q6ZUB0 917 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 POTEDQ86YR6 584 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 BORCS6Q96GS4 357 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 EIF2AK1Q9BQI3 630 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 APOL6Q9BWW8 343 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 GPR62Q9BZJ7 368 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 NXF3Q9H4D5 531 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 PDRG1Q9NUG6 133 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 MIOSQ9NXC5 875 aa16.4■□□□□ 0.22
CCDC88B-201ENST00000301897 ZMYND10O75800 440 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 ARL2P36404 184 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 CAPSQ13938 189 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 LIN9Q5TKA1 542 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 PDXDC1Q6P996 788 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 DCLRE1AQ6PJP8 1040 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 GET4Q7L5D6 327 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 GPR152Q8TDT2 470 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 PRIMPOLQ96LW4 560 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 PCDHA12Q9UN75 941 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 FANCMQ8IYD8 2048 aa16.39■□□□□ 0.21
CCDC88B-201ENST00000301897 A0A1B0GUA9 196 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 F8W810 466 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 ZBTB39O15060 712 aa16.38■□□□□ 0.21
CCDC88B-201ENST00000301897 XRCC6P12956 609 aaKnown RBP eCLIP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms