RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TMEM120BA0PK00 339 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 SAT1P21673 171 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 C1orf146Q5VVC0 180 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 ERGIC2Q96RQ1 377 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 CNOT8Q9UFF9 292 aaKnown RBP16.37■□□□□ 0.21
SHH-201ENST00000297261 COL1A1P02452 1464 aaPredicted RBP16.37■□□□□ 0.21
SHH-201ENST00000297261 KRT1P04264 644 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 TSEN2Q8NCE0 465 aaKnown RBP16.37■□□□□ 0.21
SHH-201ENST00000297261 MORC4Q8TE76 937 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 C9orf72Q96LT7 481 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 ABCB11O95342 1321 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 KCNJ1P48048 391 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 AARSP49588 968 aaKnown RBP eCLIP16.37■□□□□ 0.21
SHH-201ENST00000297261 NAB2Q15742 525 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 FAM20AQ96MK3 541 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 FAM153BP0C7A2 387 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 TRIM49P0CI25 452 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 TRIM49CP0CI26 452 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 BMP6P22004 513 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 BRD2P25440 801 aaKnown RBP16.37■□□□□ 0.21
SHH-201ENST00000297261 GCLMP48507 274 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 TMPRSS15P98073 1019 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 FAM153CQ494X1 144 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 CENPUQ71F23 418 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 PPWD1Q96BP3 646 aaKnown RBP16.37■□□□□ 0.21
SHH-201ENST00000297261 NACC1Q96RE7 527 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 FAM153AQ9UHL3 310 aa16.37■□□□□ 0.21
SHH-201ENST00000297261 NOP56O00567 594 aaKnown RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 HNRNPDLO14979 420 aaKnown RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 SLC37A4O43826 429 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 SLC9A1P19634 815 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 DHX34Q14147 1143 aaKnown RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 CCDC97Q96F63 343 aaPredicted RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 STAMBPL1Q96FJ0 436 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 NUP98P52948 1817 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 MYMKA6NI61 221 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 ABL1P00519 1130 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 MYBL2P10244 700 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 NCF2P19878 526 aaPredicted RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 KNOP1Q1ED39 458 aaKnown RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 POTEAQ6S8J7 498 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 PDIK1LQ8N165 341 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 LTBP4Q8N2S1 1624 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 SPECC1L-ADORA2AF8WAN1 911 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 PDE2AO00408 941 aaPredicted RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 PPP1R12AO14974 1030 aaPredicted RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 CFLARO15519 480 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 RNF8O76064 485 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 PDIA5Q14554 519 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 METTL13Q8N6R0 699 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 NLRP7Q8WX94 980 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 IDI2Q9BXS1 227 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 ARHGAP20Q9P2F6 1191 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 DDX20Q9UHI6 824 aaKnown RBP16.36■□□□□ 0.21
SHH-201ENST00000297261 TTLL3Q9Y4R7 772 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 ITGB4P16144 1822 aa16.36■□□□□ 0.21
SHH-201ENST00000297261 PLCH1Q4KWH8 1693 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 UCHL3P15374 230 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 LIG4P49917 911 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 ARFIP2P53365 341 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 FUT2Q10981 343 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 MTMR2Q13614 643 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 ANLNQ9NQW6 1124 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 FAM198AQ9UFP1 575 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 PCDHB4Q9Y5E5 795 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 STAM2O75886 525 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 GRM1Q13255 1194 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 LRRC36Q1X8D7 754 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 TMBIM4Q9HC24 238 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 GMNNO75496 209 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 KITP10721 976 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 DYNC1I2Q13409 638 aaKnown RBP16.35■□□□□ 0.21
SHH-201ENST00000297261 JAMLQ86YT9 394 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 DNAJC9Q8WXX5 260 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 RNF25Q96BH1 459 aaPredicted RBP16.35■□□□□ 0.21
SHH-201ENST00000297261 TSPYL2Q9H2G4 693 aaPredicted RBP16.35■□□□□ 0.21
SHH-201ENST00000297261 FBXO28Q9NVF7 368 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 NUP188Q5SRE5 1749 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 BPIFB4P59827 614 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 KRT81Q14533 505 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 KYNUQ16719 465 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 SLC35G2Q8TBE7 412 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 CCDC124Q96CT7 223 aaKnown RBP16.35■□□□□ 0.21
SHH-201ENST00000297261 RMDN3Q96TC7 470 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 ERP44Q9BS26 406 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 CALN1Q9BXU9 219 aa16.35■□□□□ 0.21
SHH-201ENST00000297261 CTCFP49711 727 aaPredicted RBP16.34■□□□□ 0.21
SHH-201ENST00000297261 GRAMD1AQ96CP6 724 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 CAND2O75155 1236 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 ASPHQ12797 758 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 CUL3Q13618 768 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 APOBEC3FQ8IUX4 373 aaKnown RBP16.34■□□□□ 0.21
SHH-201ENST00000297261 TRIM42Q8IWZ5 723 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 MTMR8Q96EF0 704 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 ADAMTS7Q9UKP4 1686 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 CDC25CP30307 473 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 ANGEL2Q5VTE6 544 aaKnown RBP16.34■□□□□ 0.21
SHH-201ENST00000297261 ZNF564Q8TBZ8 553 aaPredicted RBP16.34■□□□□ 0.21
SHH-201ENST00000297261 ZKSCAN4Q969J2 545 aaPredicted RBP16.34■□□□□ 0.21
SHH-201ENST00000297261 MTFR1LQ9H019 292 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms