RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TTC7AQ9ULT0 858 aaPredicted RBP25.85■■□□□ 1.73
TRIM54-201ENST00000296098 PAPPA2Q9BXP8 1791 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 RTN2O75298 545 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 POLGP54098 1239 aaPredicted RBP25.85■■□□□ 1.73
TRIM54-201ENST00000296098 TCEAL1Q15170 157 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 ALS2CLQ60I27 953 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 CYFIP1Q7L576 1253 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 HELQQ8TDG4 1101 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 TAS1R2Q8TE23 839 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 ZNF302Q9NR11 478 aa25.85■■□□□ 1.73
TRIM54-201ENST00000296098 OTOFQ9HC10 1997 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 CYP26A1O43174 497 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 HSF2BPO75031 334 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 CLSTN1O94985 981 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 CHRNB2P17787 502 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 TREML2Q5T2D2 321 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 TAF3Q5VWG9 929 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 C11orf63Q6NUN7 778 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.84■■□□□ 1.73
TRIM54-201ENST00000296098 RAB20Q9NX57 234 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 CTTNBP2NLQ9P2B4 639 aa25.84■■□□□ 1.73
TRIM54-201ENST00000296098 POLR2AP24928 1970 aaKnown RBP25.84■■□□□ 1.73
TRIM54-201ENST00000296098 SIP14410 1827 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 OATP04181 439 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 DLATP10515 647 aaKnown RBP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 GPC5P78333 572 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 CNTN2Q02246 1040 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 WHAMMQ8TF30 809 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 PCDHB18PQ96TA0 734 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 KCNG1Q9UIX4 513 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 MAFBQ9Y5Q3 323 aaPredicted RBP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 SYNGAP1Q96PV0 1343 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 SART1O43290 800 aaKnown RBP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 FAM153BP0C7A2 387 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 FAM153CQ494X1 144 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 LBX2Q6XYB7 198 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 SLC47A2Q86VL8 602 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 EIF1ADQ8N9N8 165 aaKnown RBP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 ZNF526Q8TF50 670 aaPredicted RBP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 RUFY1Q96T51 708 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 FAM213AQ9BRX8 229 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 DDX47Q9H0S4 455 aaKnown RBP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 CARD9Q9H257 536 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 TAF1DQ9H5J8 278 aaPredicted RBP25.83■■□□□ 1.73
TRIM54-201ENST00000296098 SLITRK6Q9H5Y7 841 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 FBXO40Q9UH90 709 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 FAM153AQ9UHL3 310 aa25.83■■□□□ 1.73
TRIM54-201ENST00000296098 ATG7O95352 703 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 GZMAP12544 262 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 LIG4P49917 911 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 ALDH5A1P51649 535 aaPredicted RBP25.82■■□□□ 1.72
TRIM54-201ENST00000296098 ERVK-9P63128 1117 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 DCAF12L1Q5VU92 463 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 SV2AQ7L0J3 742 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 MREGQ8N565 214 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 SH3GL2Q99962 352 aa25.82■■□□□ 1.72
TRIM54-201ENST00000296098 OPA1O60313 960 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 PDE6CP51160 858 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 FSTL1Q12841 308 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 SEPT14Q6ZU15 432 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 ZNF233A6NK53 670 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 FGGP02679 453 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 ITGA4P13612 1032 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 ATP4AP20648 1035 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 FMO1Q01740 532 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 PRPF4BQ13523 1007 aaKnown RBP25.81■■□□□ 1.72
TRIM54-201ENST00000296098 CUL1Q13616 776 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 KIAA1586Q9HCI6 787 aa25.81■■□□□ 1.72
TRIM54-201ENST00000296098 EXTL3O43909 919 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 MMEP08473 750 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 CYP11B1P15538 503 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 STRN3Q13033 797 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 RIOX2Q8IUF8 465 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 RNPC3Q96LT9 517 aaKnown RBP25.8■■□□□ 1.72
TRIM54-201ENST00000296098 BTBD7Q9P203 1132 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 GOLGA8KD6RF30 607 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 CAPN2P17655 700 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 SCP2P22307 547 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 GUCY2FP51841 1108 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 TRADDQ15628 312 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 TMEM143Q96AN5 459 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 NAP1L3Q99457 506 aaPredicted RBP25.8■■□□□ 1.72
TRIM54-201ENST00000296098 PORCNQ9H237 461 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 DHX33Q9H6R0 707 aaKnown RBP25.8■■□□□ 1.72
TRIM54-201ENST00000296098 ACP6Q9NPH0 428 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 CSADQ9Y600 493 aa25.8■■□□□ 1.72
TRIM54-201ENST00000296098 ZNFX1Q9P2E3 1918 aaKnown RBP25.79■■□□□ 1.72
TRIM54-201ENST00000296098 GOLGA6CA6NDK9 693 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 MIF4GDA9UHW6 222 aaKnown RBP25.79■■□□□ 1.72
TRIM54-201ENST00000296098 BHMG1C9JSJ3 638 aaPredicted RBP25.79■■□□□ 1.72
TRIM54-201ENST00000296098 PEX10O60683 326 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 ZC3H11AO75152 810 aaKnown RBP eCLIP25.79■■□□□ 1.72
TRIM54-201ENST00000296098 MTA2O94776 668 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 GOLGA6DP0CG33 693 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 CDR2Q01850 454 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 CCDC26Q8TAB7 109 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 ASAP3Q8TDY4 903 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 KCNN1Q92952 543 aa25.79■■□□□ 1.72
TRIM54-201ENST00000296098 GOLGA6AQ9NYA3 693 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms