RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 ZNF263O14978 683 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TOMM70O94826 608 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 PABPC4Q13310 644 aaKnown RBP eCLIP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 CCDC137Q6PK04 289 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 TRIM69Q86WT6 500 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 ZCCHC7Q8N3Z6 543 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 PACSIN1Q9BY11 444 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 MRPL47Q9HD33 250 aaKnown RBP12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 SEL1LQ9UBV2 794 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 GDAQ9Y2T3 454 aa12.41□□□□□ -0.42
SHROOM3-201ENST00000296043 PSMC2P35998 433 aaKnown RBP12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 LENG1Q96BZ8 264 aaPredicted RBP12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 PCDHA12Q9UN75 941 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 ADGRF5Q8IZF2 1346 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 PPP6R3Q5H9R7 873 aaPredicted RBP12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 TMC4Q7Z404 712 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 FHDC1Q9C0D6 1143 aaPredicted RBP12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 CDYLQ9Y232 598 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 PIGOQ8TEQ8 1089 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 DHX38Q92620 1227 aaKnown RBP12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 SCN3BQ9NY72 215 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 RABGEF1Q9UJ41 708 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 FANCD2Q9BXW9 1451 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 ZBED4O75132 1171 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 ITGADQ13349 1161 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 ENKURQ8TC29 256 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 FAM129AQ9BZQ8 928 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 MYH13Q9UKX3 1938 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 ADGRA3Q8IWK6 1321 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 CCDC78A2IDD5 438 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 ZBTB39O15060 712 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 SLC25A41Q8N5S1 370 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 FAM95CA0A1B0GW59 222 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 SRP72O76094 671 aaKnown RBP12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 TCAIMQ8N3R3 496 aa12.4□□□□□ -0.42
SHROOM3-201ENST00000296043 TPST1O60507 370 aa12.4□□□□□ -0.43
SHROOM3-201ENST00000296043 UBOX5O94941 541 aa12.4□□□□□ -0.43
SHROOM3-201ENST00000296043 NR1D2Q14995 579 aa12.4□□□□□ -0.43
SHROOM3-201ENST00000296043 ARHGEF37A1IGU5 675 aa12.4□□□□□ -0.43
SHROOM3-201ENST00000296043 UXS1Q8NBZ7 420 aa12.4□□□□□ -0.43
SHROOM3-201ENST00000296043 PCMTD2Q9NV79 361 aa12.4□□□□□ -0.43
SHROOM3-201ENST00000296043 DDX20Q9UHI6 824 aaKnown RBP12.4□□□□□ -0.43
SHROOM3-201ENST00000296043 WASLO00401 505 aaPredicted RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 TRIQKQ629K1 86 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 KDM7AQ6ZMT4 941 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SLC10A4Q96EP9 437 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 PCDHB6Q9Y5E3 794 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 HNRNPDLO14979 420 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 PTGS2P35354 604 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 PSTPIP2Q9H939 334 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 AQRO60306 1485 aaKnown RBP eCLIP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 FAM187AA6NFU0 413 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 CD58P19256 250 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 FCHO2Q0JRZ9 810 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 C11orf88Q6PI97 169 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 RHPN2Q8IUC4 686 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SNX12Q9UMY4 172 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SNAPC4Q5SXM2 1469 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 COPAP53621 1224 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 CNGA2Q16280 664 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 TTC8Q8TAM2 541 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 ATP8B4Q8TF62 1192 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 ATP6V1HQ9UI12 483 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 PRR29P0C7W0 189 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 YWHABP31946 246 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SLC20A2Q08357 652 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 NR5A1Q13285 461 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 CUL4AQ13619 759 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 PPP2R5BQ15173 497 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 XKR9Q5GH70 373 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 ATG14Q6ZNE5 492 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SOS2Q07890 1332 aaPredicted RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 ARL4AP40617 200 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 NUDT2P50583 147 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 ROR2Q01974 943 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SDE2Q6IQ49 451 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SUCLG2Q96I99 432 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SYNJ2O15056 1496 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 FKBP3Q00688 224 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 AOC3Q16853 763 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 TNIP2Q8NFZ5 429 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 VPS39Q96JC1 886 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 TMEM161AQ9NX61 479 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SH3GLB1Q9Y371 365 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 HEY1Q9Y5J3 304 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 M0R2C6 588 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 CYTH3O43739 400 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 PSMA4P25789 261 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF746Q6NUN9 644 aaPredicted RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 SCG3Q8WXD2 468 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 C19orf60Q96EN9 201 aa12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 METTL5Q9NRN9 209 aaKnown RBP12.39□□□□□ -0.43
SHROOM3-201ENST00000296043 MEIS1O00470 390 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 KRT36O76013 467 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 CTTNQ14247 550 aaKnown RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 KLHL12Q53G59 568 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 SPATA5Q8NB90 893 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 CCDC28BQ9BUN5 200 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms