RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KREMEN1Q96MU8 473 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 PCYT2Q99447 389 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 MSTO1Q9BUK6 570 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 RAB21Q9UL25 225 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 L1RE1Q9UN81 338 aa12.4□□□□□ -0.42
CUX1-202ENST00000292538 MYH11P35749 1972 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 TXNP10599 105 aaKnown RBP12.39□□□□□ -0.43
CUX1-202ENST00000292538 COPB2P35606 906 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 MFAP3P55082 362 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 MESDQ14696 234 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 TRADDQ15628 312 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 IFI16Q16666 785 aaKnown RBP12.39□□□□□ -0.43
CUX1-202ENST00000292538 SND1Q7KZF4 910 aaKnown RBP eCLIP12.39□□□□□ -0.43
CUX1-202ENST00000292538 ARMC9Q7Z3E5 817 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 SEPT1Q8WYJ6 367 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 NT5C1BQ96P26 610 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 EPB41L5Q9HCM4 733 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 VPS18Q9P253 973 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 AGTPBP1Q9UPW5 1226 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 PCDHGC5Q9Y5F6 944 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 KIF13BQ9NQT8 1826 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 NFASCO94856 1347 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 H3BQF6 201 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 STAM2O75886 525 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 KIF4AO95239 1232 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 GUCY2FP51841 1108 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 NEDD9Q14511 834 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 C10orf76Q5T2E6 689 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 SCARA3Q6AZY7 606 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 NOP9Q86U38 636 aaKnown RBP12.39□□□□□ -0.43
CUX1-202ENST00000292538 PASD1Q8IV76 773 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 RNF149Q8NC42 400 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 RPGRIP1Q96KN7 1286 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 FBXL5Q9UKA1 691 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 GINS2Q9Y248 185 aa12.39□□□□□ -0.43
CUX1-202ENST00000292538 MAFBQ9Y5Q3 323 aaPredicted RBP12.39□□□□□ -0.43
CUX1-202ENST00000292538 OSBPP22059 807 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 PIK3CAP42336 1068 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 BRDTQ58F21 947 aaPredicted RBP12.38□□□□□ -0.43
CUX1-202ENST00000292538 HSP90B2PQ58FF3 399 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 SPIRE2Q8WWL2 714 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 TRIM31Q9BZY9 425 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 RBAKQ9NYW8 714 aaPredicted RBP12.38□□□□□ -0.43
CUX1-202ENST00000292538 SPDYE5A6NIY4 337 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 CNMDO75829 334 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 TUBB4BP68371 445 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 SKIDA1Q1XH10 827 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 ZNF394Q53GI3 561 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 FAM160B1Q5W0V3 765 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 AADACL2Q6P093 401 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 SLC17A8Q8NDX2 589 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 LMBR1Q8WVP7 490 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 PCDHB18PQ96TA0 734 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 NTPCRQ9BSD7 190 aaKnown RBP12.38□□□□□ -0.43
CUX1-202ENST00000292538 TMEM8AQ9HCN3 771 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 AMFRQ9UKV5 643 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 INO80B-WBP1J3KQ70 363 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 HEXIM1O94992 359 aaKnown RBP12.38□□□□□ -0.43
CUX1-202ENST00000292538 EDN1P05305 212 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 GLI1P08151 1106 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 GJA5P36382 358 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 GPS2Q13227 327 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 MKRN4PQ13434 485 aaPredicted RBP12.38□□□□□ -0.43
CUX1-202ENST00000292538 MYBPC2Q14324 1141 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 HLTFQ14527 1009 aaKnown RBP eCLIP12.38□□□□□ -0.43
CUX1-202ENST00000292538 WDR44Q5JSH3 913 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 USP37Q86T82 979 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 THNSL1Q8IYQ7 743 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 ZNF516Q92618 1163 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 INO80BQ9C086 356 aaPredicted RBP12.38□□□□□ -0.43
CUX1-202ENST00000292538 HAPLN2Q9GZV7 340 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 DDX47Q9H0S4 455 aaKnown RBP12.38□□□□□ -0.43
CUX1-202ENST00000292538 ST6GALNAC4Q9H4F1 302 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 TSKSQ9UJT2 592 aa12.38□□□□□ -0.43
CUX1-202ENST00000292538 MYPNQ86TC9 1320 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 BRCA2P51587 3418 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 KRIT1O00522 736 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 CLDN3O15551 220 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 ITGA4P13612 1032 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 TNFSF9P41273 254 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 PDE6CP51160 858 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 CLCN3P51790 818 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 CAPSQ13938 189 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 MAP9Q49MG5 647 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 METTL7BQ6UX53 244 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 CCNI2Q6ZMN8 369 aaPredicted RBP12.37□□□□□ -0.43
CUX1-202ENST00000292538 CPNE8Q86YQ8 564 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 SELENOOQ9BVL4 669 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 C17orf75Q9HAS0 396 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 PDLIM7Q9NR12 457 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 C1orf112Q9NSG2 853 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 ARHGAP28Q9P2N2 729 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 ZHX1Q9UKY1 873 aaPredicted RBP12.37□□□□□ -0.43
CUX1-202ENST00000292538 NFU1Q9UMS0 254 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 COG5Q9UP83 839 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 CXCL11O14625 94 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 PRLRP16471 622 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 C12orf56Q8IXR9 622 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 CPA5Q8WXQ8 436 aa12.37□□□□□ -0.43
CUX1-202ENST00000292538 FGGP02679 453 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms