RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 NEBLO76041 1014 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 GAP43P17677 238 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 VPS41P49754 854 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 MAPK7Q13164 816 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 FAM133BQ5BKY9 247 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 DAB2IPQ5VWQ8 1189 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CCDC137Q6PK04 289 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 C1orf131Q8NDD1 294 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIG3-201ENST00000262327 ZKSCAN4Q969J2 545 aaPredicted RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 CCDC127Q96BQ5 260 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 MIEF2Q96C03 454 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 HVCN1Q96D96 273 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 FAM118BQ9BPY3 351 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 ZNF577Q9BSK1 485 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 FBXO28Q9NVF7 368 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 RPTORQ8N122 1335 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CNTNAP1P78357 1384 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 SIPA1L1O43166 1804 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CLRN2A0PK11 232 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 GTPBP10A4D1E9 387 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 KLHL33A6NCF5 533 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 TCP10L2B9ZVM9 353 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 WNT10BO00744 389 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CYP26A1O43174 497 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 PSMD10O75832 226 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 RASSF9O75901 435 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 ACSL3O95573 720 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 FOSP01100 380 aaPredicted RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 NPEPPSP55786 919 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 TMEM179Q6ZVK1 233 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 YTHDF3Q7Z739 585 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 DAW1Q8N136 415 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 PPM1KQ8N3J5 372 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 GIMAP7Q8NHV1 300 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 C1orf54Q8WWF1 131 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 SEC14L1Q92503 715 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CHMP6Q96FZ7 201 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 PWWP2AQ96N64 755 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 PAGR1Q9BTK6 254 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 DDX23Q9BUQ8 820 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 CARD9Q9H257 536 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 PABPC3Q9H361 631 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 GPRC5CQ9NQ84 441 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 GRHL1Q9NZI5 618 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CNOT7Q9UIV1 285 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 INTUQ9ULD6 942 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 DICER1Q9UPY3 1922 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 NCANO14594 1321 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 ARHGEF35A5YM69 484 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 TBC1D12O60347 775 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CIITAP33076 1130 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 PTGIRP43119 386 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 SMTNP53814 917 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 LONRF1Q17RB8 773 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CYB5D1Q6P9G0 228 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 SLC47A2Q86VL8 602 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 MICALL2Q8IY33 904 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 GPC2Q8N158 579 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 EIF1ADQ8N9N8 165 aaKnown RBP10.81□□□□□ -0.68
LIG3-201ENST00000262327 PLEKHO2Q8TD55 490 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 TLCD1Q96CP7 247 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 CSRNP1Q96S65 589 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 TXLNGYQ9BZA5 131 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 ADAM7Q9H2U9 754 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 GJA3Q9Y6H8 435 aa10.81□□□□□ -0.68
LIG3-201ENST00000262327 ZNF541Q9H0D2 1346 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 SPOPO43791 374 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 CYP3A4P08684 503 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 DLATP10515 647 aaKnown RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 SSR1P43307 286 aaKnown RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 TNFAIP1Q13829 316 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 ERMARDQ5T6L9 678 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 RBM26Q5T8P6 1007 aaKnown RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 LLGL2Q6P1M3 1020 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 FAM228AQ86W67 206 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 FUKQ8N0W3 1084 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 LMO3Q8TAP4 145 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 TBC1D31Q96DN5 1066 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 GREB1LQ9C091 1923 aaPredicted RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 EIF3DO15371 548 aaKnown RBP eCLIP10.8□□□□□ -0.68
LIG3-201ENST00000262327 PAX7P23759 505 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 SSTR3P32745 418 aaPredicted RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 RDXP35241 583 aaKnown RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 PPP1R7Q15435 360 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 NOP9Q86U38 636 aaKnown RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 CDAN1Q8IWY9 1227 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 ATG4AQ8WYN0 398 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 SAAL1Q96ER3 474 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 KIFC3Q9BVG8 833 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 TRIM7Q9C029 511 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 INTS9Q9NV88 658 aaKnown RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 CTNNAL1Q9UBT7 734 aa10.8□□□□□ -0.68
LIG3-201ENST00000262327 TPX2Q9ULW0 747 aaKnown RBP10.8□□□□□ -0.68
LIG3-201ENST00000262327 CLDN3O15551 220 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 ECM2O94769 699 aaPredicted RBP10.79□□□□□ -0.68
LIG3-201ENST00000262327 STAT2P52630 851 aa10.79□□□□□ -0.68
LIG3-201ENST00000262327 HIBCHQ6NVY1 386 aaPredicted RBP10.79□□□□□ -0.68
LIG3-201ENST00000262327 PADI6Q6TGC4 694 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms