RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LAMB3Q13751 1172 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 ANKRD40Q6AI12 368 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 CLEC10AQ8IUN9 316 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 TRIM42Q8IWZ5 723 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 MRPL9Q9BYD2 267 aaKnown RBP14.6□□□□□ -0.07
LDLR-201ENST00000252444 GLIS2Q9BZE0 524 aaPredicted RBP14.6□□□□□ -0.07
LDLR-201ENST00000252444 TMEM60Q9H2L4 133 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 TAF1DQ9H5J8 278 aaPredicted RBP14.6□□□□□ -0.07
LDLR-201ENST00000252444 TMEM88BA6NKF7 163 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 ZNF449Q6P9G9 518 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 RFFLQ8WZ73 363 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 CARD6Q9BX69 1037 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 NIF3L1Q9GZT8 377 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 GOLGA8IPA6NC78 632 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 GOLGA8JA6NMD2 632 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 CREMQ03060 361 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 GNASQ5JWF2 1037 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 WDR49Q8IV35 697 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 NKX2-3Q8TAU0 364 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 CGRRF1Q99675 332 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 PRDM16Q9HAZ2 1276 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 GOLGA8QA0A0J9YX86 632 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 GOLGA8OA6NCC3 632 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 GOLGA8NF8WBI6 632 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 RHOXF2BP0C7M4 288 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 SLC12A2P55011 1212 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 MAP2K5Q13163 448 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 RHOXF2Q9BQY4 288 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 OGFRQ9NZT2 677 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 TOM1L1O75674 476 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 EGFRP00533 1210 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 SH3D19Q5HYK7 790 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 GSDMBQ8TAX9 411 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 TRIM7Q9C029 511 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 KCNMB3Q9NPA1 279 aa14.59□□□□□ -0.07
LDLR-201ENST00000252444 SLC37A4O43826 429 aa14.58□□□□□ -0.07
LDLR-201ENST00000252444 ARHGAP25P42331 645 aa14.58□□□□□ -0.07
LDLR-201ENST00000252444 GCLMP48507 274 aa14.58□□□□□ -0.07
LDLR-201ENST00000252444 P2RX7Q99572 595 aaKnown RBP14.58□□□□□ -0.07
LDLR-201ENST00000252444 ODC1P11926 461 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 SDC4P31431 198 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 PTGER2P43116 358 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 MESDQ14696 234 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 PTF1AQ7RTS3 328 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 VSIG10LQ86VR7 867 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 WHAMMQ8TF30 809 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 UROC1Q96N76 676 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 CDK5RAP1Q96SZ6 601 aaKnown RBP14.58□□□□□ -0.08
LDLR-201ENST00000252444 CALCOCO1Q9P1Z2 691 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 STRCP1A6NGW2 1772 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 CAPN15O75808 1086 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 SETSIPP0DME0 302 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 PSMA2P25787 234 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 ADCY8P40145 1251 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 PLD1Q13393 1074 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 DRAP1Q14919 205 aaPredicted RBP14.58□□□□□ -0.08
LDLR-201ENST00000252444 HOMEZQ8IX15 550 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 KCTD6Q8NC69 237 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 FAM149B1Q96BN6 582 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 AGPAT1Q99943 283 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 FBXO28Q9NVF7 368 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 MARF1Q9Y4F3 1742 aaKnown RBP14.58□□□□□ -0.08
LDLR-201ENST00000252444 ADAMTS7Q9UKP4 1686 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 PP2D1A8MPX8 630 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 EFCAB14O75071 495 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 RPUSD2Q8IZ73 545 aaKnown RBP14.58□□□□□ -0.08
LDLR-201ENST00000252444 MED4Q9NPJ6 270 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 ITGA11Q9UKX5 1188 aa14.58□□□□□ -0.08
LDLR-201ENST00000252444 H3BRJ5 948 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 FKTNO75072 461 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 TAF6P49848 677 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 EPHB4P54760 987 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 EIF3BP55884 814 aaKnown RBP14.57□□□□□ -0.08
LDLR-201ENST00000252444 CDKL3Q8IVW4 592 aaPredicted RBP14.57□□□□□ -0.08
LDLR-201ENST00000252444 PALM2Q8IXS6 379 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 SRRM1Q8IYB3 904 aaKnown RBP14.57□□□□□ -0.08
LDLR-201ENST00000252444 KRT12Q99456 494 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 CNOT8Q9UFF9 292 aaKnown RBP14.57□□□□□ -0.08
LDLR-201ENST00000252444 APOEP02649 317 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 VIMP08670 466 aaKnown RBP14.57□□□□□ -0.08
LDLR-201ENST00000252444 EFCC1Q9HA90 598 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 PCDHB7Q9Y5E2 793 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 PCDHB2Q9Y5E7 798 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 H7C0C1 242 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 ATP5OP48047 213 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 ITPRIPL1Q6GPH6 555 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 CCDC25Q86WR0 208 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 C10orf67Q8IYJ2 551 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 CCDC63Q8NA47 563 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 MTMR9Q96QG7 549 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 ASB7Q9H672 318 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 ANKRD36CQ5JPF3 1778 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 LRRC53A6NM62 1247 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 SFI1A8K8P3 1242 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 ADORA2AP29274 412 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 NMT1P30419 496 aaKnown RBP14.57□□□□□ -0.08
LDLR-201ENST00000252444 SERPINB6P35237 376 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 ACVR2BQ13705 512 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 SETDB1Q15047 1291 aa14.57□□□□□ -0.08
LDLR-201ENST00000252444 Q3C1V9 767 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms