RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 SLC17A8Q8NDX2 589 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 GOLGA5Q8TBA6 731 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 HVCN1Q96D96 273 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 ERGIC2Q96RQ1 377 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 CXCL16Q9H2A7 254 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 HMX1Q9NP08 348 aaPredicted RBP14.06□□□□□ -0.16
HIF3A-201ENST00000244302 TRMT13Q9NUP7 481 aaKnown RBP14.06□□□□□ -0.16
HIF3A-201ENST00000244302 AGO2Q9UKV8 859 aaKnown RBP14.06□□□□□ -0.16
HIF3A-201ENST00000244302 PHLPP2Q6ZVD8 1323 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 AFPP02771 609 aaKnown RBP14.06□□□□□ -0.16
HIF3A-201ENST00000244302 DLATP10515 647 aaKnown RBP14.06□□□□□ -0.16
HIF3A-201ENST00000244302 HOXC8P31273 242 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 ACLYP53396 1101 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 DMTNQ08495 405 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 MTF1Q14872 753 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 PTPN14Q15678 1187 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 TMEM139Q8IV31 216 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 ZBTB8OSQ8IWT0 167 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 SLAIN1Q8ND83 568 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 ZNF516Q92618 1163 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 MSTO1Q9BUK6 570 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 TTYH3Q9C0H2 523 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 PDE11AQ9HCR9 933 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 GTF2IRD1Q9UHL9 959 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 STYXL1Q9Y6J8 313 aa14.06□□□□□ -0.16
HIF3A-201ENST00000244302 SCN10AQ9Y5Y9 1956 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 USP27XA6NNY8 438 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 LRRIQ3A6PVS8 624 aaPredicted RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 ACKR2O00590 384 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 MEFVO15553 781 aaPredicted RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 NRDCO43847 1150 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 FAM189A1O60320 539 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 GNRH1P01148 92 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 PIGRP01833 764 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 CTSHP09668 335 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 ARF4P18085 180 aaPredicted RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 VAMP7P51809 220 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 PRPF4BQ13523 1007 aaKnown RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 FKBP15Q5T1M5 1219 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 EXOC8Q8IYI6 725 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 THNSL1Q8IYQ7 743 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 FBXL18Q96ME1 805 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 LSM14BQ9BX40 385 aaKnown RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 PTPRHQ9HD43 1115 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 NLRC4Q9NPP4 1024 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 PRDM4Q9UKN5 801 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 A0A1W2PQC6 194 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 CLDN3O15551 220 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 ASAP2O43150 1006 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 PNMA6AP0CW24 399 aaPredicted RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 SFPQP23246 707 aaKnown RBP eCLIP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 FMO5P49326 533 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 EFNA5P52803 228 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 NKX3-2P78367 333 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 TFDP1Q14186 410 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 ATF7IP2Q5U623 682 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 PPFIBP1Q86W92 1011 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 GPD1LQ8N335 351 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 PARD3BQ8TEW8 1205 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 MKNK1Q9BUB5 465 aa14.05□□□□□ -0.16
HIF3A-201ENST00000244302 MRPL4Q9BYD3 311 aaKnown RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 METTL14Q9HCE5 456 aaKnown RBP14.05□□□□□ -0.16
HIF3A-201ENST00000244302 SMIM35A0A1B0GVV1 85 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 AKR1B15C9JRZ8 316 aaPredicted RBP14.04□□□□□ -0.16
HIF3A-201ENST00000244302 MFAP3LO75121 409 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 TRIM21P19474 475 aaKnown RBP14.04□□□□□ -0.16
HIF3A-201ENST00000244302 GARTP22102 1010 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 PON1P27169 355 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 HOXA11P31270 313 aaPredicted RBP14.04□□□□□ -0.16
HIF3A-201ENST00000244302 KRT9P35527 623 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 CYP24A1Q07973 514 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 TMEM132AQ24JP5 1023 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 FAM212AQ96EL1 285 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 MFSD14AQ96MC6 490 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 DEFB118Q96PH6 123 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 CHP1Q99653 195 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 ARID3AQ99856 593 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 KATNAL1Q9BW62 490 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 TMEM117Q9H0C3 514 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 ITIH6Q6UXX5 1313 aa14.04□□□□□ -0.16
HIF3A-201ENST00000244302 H0YCG3 227 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 TSPAN1O60635 241 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 TOM1L1O75674 476 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 PROZP22891 400 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 PHKA2P46019 1235 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 ITGA7Q13683 1181 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 MYBPC2Q14324 1141 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 TSHZ1Q6ZSZ6 1077 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 RNF180Q86T96 592 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 CCAR2Q8N163 923 aaKnown RBP14.03□□□□□ -0.16
HIF3A-201ENST00000244302 TMEM174Q8WUU8 243 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 SEMA4DQ92854 862 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 KCNN1Q92952 543 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.03□□□□□ -0.16
HIF3A-201ENST00000244302 TRPV6Q9H1D0 765 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 SIX2Q9NPC8 291 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 OGFRQ9NZT2 677 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 HES2Q9Y543 173 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 A0A0U1RQJ8 604 aa14.03□□□□□ -0.16
HIF3A-201ENST00000244302 FAM170AA1A519 330 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms