RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PSMA2P25787 234 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 MAPK1P28482 360 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 POTEEQ6S8J3 1075 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 KRT73Q86Y46 540 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TRMT44Q8IYL2 757 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 KIAA2013Q8IYS2 634 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 NR1H4Q96RI1 486 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 EVA1BQ9NVM1 165 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 PCDHA13Q9Y5I0 950 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 SPACA6W5XKT8 324 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 NEXMIFQ5QGS0 1516 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 GNPATO15228 680 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 DYNC1LI2O43237 492 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TOM1L1O75674 476 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 CCR3P51677 355 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 BNC1Q01954 994 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TMED2Q15363 201 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 SCYL2Q6P3W7 929 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 LARGE2Q8N3Y3 721 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 MB21D1Q8N884 522 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 MAP4K1Q92918 833 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF560Q96MR9 790 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 RIC8BQ9NVN3 520 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 THRAP3Q9Y2W1 955 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 RWDD3Q9Y3V2 267 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TBKBP1A7MCY6 615 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 FAM25AB3EWG3 89 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 FAM25CB3EWG5 89 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 FAM25GB3EWG6 89 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 CFAP99D6REC4 459 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 PDE9AO76083 593 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 SERPINH1P50454 418 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 PARP9Q8IXQ6 854 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 NLGN1Q8N2Q7 840 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 URGCPQ8TCY9 931 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TNIP3Q96KP6 325 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 ZFP42Q96MM3 310 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 C17orf75Q9HAS0 396 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 BSDC1Q9NW68 430 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 COPG2Q9UBF2 871 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 ME3Q16798 604 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 FAM133BQ5BKY9 247 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 CEP70Q8NHQ1 597 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 SLC20A1Q8WUM9 679 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 WDR60Q8WVS4 1066 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 KLC4Q9NSK0 619 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 OLA1Q9NTK5 396 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TESPA1A2RU30 521 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 NCAM2O15394 837 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 HDDC2Q7Z4H3 204 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 XXYLT1Q8NBI6 393 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 JADE3Q92613 823 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 NEK6Q9HC98 313 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 STX7O15400 261 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 STX11O75558 287 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 USP11P51784 963 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 RESP18Q5W5W9 173 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 INPP5DQ92835 1189 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 MED15Q96RN5 788 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 CALN1Q9BXU9 219 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 SLC38A7Q9NVC3 462 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TRAF3IP3Q9Y228 551 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 KIF1AQ12756 1690 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 PEX5P50542 639 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 NDUFA8P51970 172 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 MAPRE1Q15691 268 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TAGAPQ8N103 731 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 COG1Q8WTW3 980 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 HNRNPLLQ8WVV9 542 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 QKIQ96PU8 341 aaKnown RBP eCLIP6.41□□□□□ -1.385e-6■■■□□ 15.5
VPS13D-201ENST00000011700 SRPK1Q96SB4 655 aaKnown RBP6.41□□□□□ -1.38
VPS13D-201ENST00000011700 SH3GL2Q99962 352 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 TUFT1Q9NNX1 390 aa6.41□□□□□ -1.38
VPS13D-201ENST00000011700 ARIH2O95376 493 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ANP32DO95626 131 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 HOXB8P17481 243 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 MXD4Q14582 209 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 SDE2Q6IQ49 451 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 CCNYQ8ND76 341 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ABHD10Q9NUJ1 306 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 VPS54Q9P1Q0 977 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 NUP205Q92621 2012 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 SSU72P8A0A1W2PR75 194 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 PDE8BO95263 885 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 DNAJB2P25686 324 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 SOX5P35711 763 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 STAT3P40763 770 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 HK2P52789 917 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 RPL19P84098 196 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 CUL4AQ13619 759 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF667Q5HYK9 610 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 EFHC2Q5JST6 749 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ALKBH5Q6P6C2 394 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 SRLQ86TD4 932 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 TTC30AQ86WT1 665 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 LRRC49Q8IUZ0 686 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 TTC30BQ8N4P2 665 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 SCFD2Q8WU76 684 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 IFT43Q96FT9 208 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 TRPC7Q9HCX4 862 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms