RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 FAN1Q9Y2M0 1017 aa11.42□□□□□ -0.58
SCN1A-222ENST00000642141 PRG3Q9Y2Y8 225 aaPredicted RBP11.42□□□□□ -0.58
SCN1A-222ENST00000642141 PCDHB6Q9Y5E3 794 aa11.42□□□□□ -0.58
SCN1A-222ENST00000642141 HCFC2Q9Y5Z7 792 aa11.42□□□□□ -0.58
SCN1A-222ENST00000642141 ARHGEF35A5YM69 484 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 TTLL13PA6NNM8 815 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 PP2D1A8MPX8 630 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 F8W810 466 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 NRP1O14786 923 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 ALDH2P05091 517 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 SRGAP2BP0DMP2 458 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 XRCC6P12956 609 aaKnown RBP eCLIP11.41□□□□□ -0.58
SCN1A-222ENST00000642141 EPCAMP16422 314 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 NCLP19338 710 aaKnown RBP11.41□□□□□ -0.58
SCN1A-222ENST00000642141 CDC25AP30304 524 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 OR1G1P47890 313 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 SCNN1GP51170 649 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 PTGDRQ13258 359 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 KCNC3Q14003 757 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 AMHR2Q16671 573 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 TMEM132AQ24JP5 1023 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 RARS2Q5T160 578 aaKnown RBP11.41□□□□□ -0.58
SCN1A-222ENST00000642141 DDX53Q86TM3 631 aaKnown RBP11.41□□□□□ -0.58
SCN1A-222ENST00000642141 C4orf32Q8N8J7 132 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 POLR3CQ9BUI4 534 aaPredicted RBP11.41□□□□□ -0.58
SCN1A-222ENST00000642141 ZBP1Q9H171 429 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 CACNG4Q9UBN1 327 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 LRWD1Q9UFC0 647 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 PARP2Q9UGN5 583 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 NOL7Q9UMY1 257 aaKnown RBP11.41□□□□□ -0.58
SCN1A-222ENST00000642141 KIAA1024Q9UPX6 916 aa11.41□□□□□ -0.58
SCN1A-222ENST00000642141 U2AF2P26368 475 aaKnown RBP eCLIP11.4□□□□□ -0.58
SCN1A-222ENST00000642141 RPA1P27694 616 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 BMS1Q14692 1282 aaKnown RBP11.4□□□□□ -0.58
SCN1A-222ENST00000642141 CBX2Q14781 532 aaPredicted RBP11.4□□□□□ -0.58
SCN1A-222ENST00000642141 RABEP1Q15276 862 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 ZRSR1Q15695 479 aaKnown RBP11.4□□□□□ -0.58
SCN1A-222ENST00000642141 IL17AQ16552 155 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 TMEM184AQ6ZMB5 413 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 B3GALT6Q96L58 329 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 KIFC3Q9BVG8 833 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 PHF7Q9BWX1 381 aaPredicted RBP11.4□□□□□ -0.58
SCN1A-222ENST00000642141 BHMT2Q9H2M3 363 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 DDX19AQ9NUU7 478 aaKnown RBP11.4□□□□□ -0.58
SCN1A-222ENST00000642141 KANSL3Q9P2N6 904 aa11.4□□□□□ -0.58
SCN1A-222ENST00000642141 DBR1Q9UK59 544 aaKnown RBP11.4□□□□□ -0.58
SCN1A-222ENST00000642141 ARID2Q68CP9 1835 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 CNTNAP2Q9UHC6 1331 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 LOC730098B7Z3J9 87 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 ST18O60284 1047 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 CTSAP10619 480 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 CYP11B2P19099 503 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 KLRC2P26717 231 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 AXLP30530 894 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 POU5F1BQ06416 359 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 PTPN14Q15678 1187 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 TMC5Q6UXY8 1006 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 IFNLR1Q8IU57 520 aaPredicted RBP11.39□□□□□ -0.59
SCN1A-222ENST00000642141 ZBTB8OSQ8IWT0 167 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 CNNM3Q8NE01 707 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 MCPH1Q8NEM0 835 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 SUSD6Q92537 303 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 CASP10Q92851 521 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 TMX3Q96JJ7 454 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 PLIN2Q99541 437 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 CXCL16Q9H2A7 254 aa11.39□□□□□ -0.59
SCN1A-222ENST00000642141 A0A1B0GUA9 196 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 FSD2A1L4K1 749 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 SPDYE4A6NLX3 237 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 PRR33A8MZF0 331 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 E9PMD0 336 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 EDN1P05305 212 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 CNPP09543 421 aaKnown RBP11.38□□□□□ -0.59
SCN1A-222ENST00000642141 SPATA31D3P0C874 917 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 HOXB8P17481 243 aaPredicted RBP11.38□□□□□ -0.59
SCN1A-222ENST00000642141 GJB2P29033 226 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 TRAPPC10P48553 1259 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 FXR2P51116 673 aaKnown RBP eCLIP11.38□□□□□ -0.59
SCN1A-222ENST00000642141 PRPF4BQ13523 1007 aaKnown RBP11.38□□□□□ -0.59
SCN1A-222ENST00000642141 TPRNQ4KMQ1 711 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 HERC4Q5GLZ8 1057 aaPredicted RBP11.38□□□□□ -0.59
SCN1A-222ENST00000642141 CES5AQ6NT32 575 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 SLC27A1Q6PCB7 646 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 SPATA31D4Q6ZUB0 917 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 HFE2Q6ZVN8 426 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 COLGALT2Q8IYK4 626 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 DEPTORQ8TB45 409 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 SNX29Q8TEQ0 813 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 SLC22A17Q8WUG5 538 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 CCDC51Q96ER9 411 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 TMEM175Q9BSA9 504 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 NFKBIZQ9BYH8 718 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 POMKQ9H5K3 350 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 UBN1Q9NPG3 1134 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 MARCH5Q9NX47 278 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 GDAQ9Y2T3 454 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 HCN4Q9Y3Q4 1203 aa11.38□□□□□ -0.59
SCN1A-222ENST00000642141 CCDC169A6NNP5 214 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 H3BQV1 296 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 PRKCBP05771 671 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms