RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ADAM9Q13443 819 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 TMEM164Q5U3C3 297 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 USP17L6PQ6QN14 398 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 FBXO33Q7Z6M2 555 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 VPS52Q8N1B4 723 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ALKBH8Q96BT7 664 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 OLFML3Q9NRN5 406 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 UNC13BO14795 1591 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 TMEM247A6NEH6 219 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF263O14978 683 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ATP2C2O75185 946 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 MXI1P50539 228 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 USP11P51784 963 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 PDE1BQ01064 536 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CUL1Q13616 776 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 FAM171A1Q5VUB5 890 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 DENND2CQ68D51 928 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ZMAT2Q96NC0 199 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 TSGA10Q9BZW7 698 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 MRPL47Q9HD33 250 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 NGRNQ9NPE2 291 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 RNF186Q9NXI6 227 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ADAMTS13Q76LX8 1427 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CFAP99D6REC4 459 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 H0Y626 953 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 LAMTOR5O43504 91 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 TRAK2O60296 914 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 DNAJC6O75061 913 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 PYGLP06737 847 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CYP2D6P10635 497 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF165P49910 485 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 OAZ1P54368 228 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 RTP1P59025 263 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 CCDC38Q502W7 563 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 NFRKBQ6P4R8 1299 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 TRMT11Q7Z4G4 463 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 FAM186BQ8IYM0 893 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 SENP7Q9BQF6 1050 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 AASDHPPTQ9NRN7 309 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 DAAM1Q9Y4D1 1078 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 COL5A2P05997 1499 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 BTBD19C9JJ37 291 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 GOLGA8SH3BPF8 625 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ZBTB7BO15156 539 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 SEPT4O43236 478 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ATG13O75143 517 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 MYL1P05976 194 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 HSD17B4P51659 736 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 SBK1Q52WX2 424 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 MFSD4BQ5TF39 518 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 C12orf60Q5U649 245 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 MOB2Q70IA6 237 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 RAB44Q7Z6P3 723 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 SMG7Q92540 1137 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 PCIF1Q9H4Z3 704 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 ZC4H2Q9NQZ6 224 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 SEL1LQ9UBV2 794 aa5.36□□□□□ -1.55
SCN1A-218ENST00000640036 BZW2Q9Y6E2 419 aaKnown RBP5.36□□□□□ -1.55
SCN1A-218ENST00000640036 KIAA0391O15091 583 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 DDHD2O94830 711 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 KIF18AQ8NI77 898 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF296Q8WUU4 475 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 STRBPQ96SI9 672 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SIK2Q9H0K1 926 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 BHMT2Q9H2M3 363 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 LRRC4BQ9NT99 713 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SPDYE5A6NIY4 337 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 MYO1FO00160 1098 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SELPP16109 830 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 IFNA8P32881 189 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 THOC5Q13769 683 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TAF11Q15544 211 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 DNAJC24Q6P3W2 148 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 HERC6Q8IVU3 1022 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 RDM1Q8NG50 284 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 FBXO32Q969P5 355 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ADAM2Q99965 735 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ZBTB40Q9NUA8 1239 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CTNND2Q9UQB3 1225 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TMCC1O94876 653 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 IL18RAPO95256 599 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 HMBSP08397 361 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TERF1P54274 439 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 KLHL30Q0D2K2 578 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CHRDL2Q6WN34 429 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 DDI1Q8WTU0 396 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TIFAQ96CG3 184 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 GPRASP2Q96D09 838 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SPATA16Q9BXB7 569 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 VPS37BQ9H9H4 285 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 PIH1D3Q9NQM4 214 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CHST12Q9NRB3 414 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ZSWIM5Q9P217 1185 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 NWD1Q149M9 1564 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ABCC12Q96J65 1359 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TTC36A6NLP5 189 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 DUSP11O75319 330 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 PAMP19021 973 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TBXAS1P24557 533 aaPredicted RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms