RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 AMPD2Q01433 879 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 TMEM161BQ8NDZ6 487 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 KCNV2Q8TDN2 545 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 SPAG5Q96R06 1193 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLN6-217ENST00000636964 IFIH1Q9BYX4 1025 aaKnown RBP12.47□□□□□ -0.41
CLN6-217ENST00000636964 HAUS4Q9H6D7 363 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 FAM169AQ9Y6X4 670 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 GRIN2DO15399 1336 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 LRRN2O75325 713 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 ERLIN1O75477 346 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 FARP2O94887 1054 aaPredicted RBP12.47□□□□□ -0.41
CLN6-217ENST00000636964 SLC25A27O95847 323 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 MYBL2P10244 700 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 FMO5P49326 533 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 NCKAP1LP55160 1127 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 NAIF1Q69YI7 327 aaPredicted RBP12.47□□□□□ -0.41
CLN6-217ENST00000636964 SAAL1Q96ER3 474 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 FGD4Q96M96 766 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 EDEM3Q9BZQ6 932 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 MLXIPQ9HAP2 919 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 HSPBP1Q9NZL4 362 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 TBX20Q9UMR3 447 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 ZNF232Q9UNY5 417 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 PCDHA13Q9Y5I0 950 aa12.47□□□□□ -0.41
CLN6-217ENST00000636964 ADGRA3Q8IWK6 1321 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 LOC285556D6RIA3 1793 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 GSTTP1A0A1W2PQM5 241 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 EDNRBP24530 442 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 MARK3P27448 753 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 ERVK-9P63128 1117 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 SLC9C1Q4G0N8 1177 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 XKR3Q5GH77 459 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 FBXO16Q8IX29 292 aaPredicted RBP12.46□□□□□ -0.41
CLN6-217ENST00000636964 GSPT2Q8IYD1 628 aaKnown RBP12.46□□□□□ -0.41
CLN6-217ENST00000636964 NME8Q8N427 588 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 POLR3FQ9H1D9 316 aaPredicted RBP12.46□□□□□ -0.41
CLN6-217ENST00000636964 RRAGCQ9HB90 399 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 SIX2Q9NPC8 291 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 NUB1Q9Y5A7 615 aa12.46□□□□□ -0.41
CLN6-217ENST00000636964 MYH9P35579 1960 aaKnown RBP12.46□□□□□ -0.41
CLN6-217ENST00000636964 CTAGE9A4FU28 777 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 SOCS7O14512 581 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 KRT86O43790 486 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 GRIN3BO60391 1043 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 DKC1O60832 514 aaKnown RBP eCLIP12.46□□□□□ -0.42
CLN6-217ENST00000636964 DGAT1O75907 488 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 MAPTP10636 758 aaKnown RBP12.46□□□□□ -0.42
CLN6-217ENST00000636964 POLGP54098 1239 aaPredicted RBP12.46□□□□□ -0.42
CLN6-217ENST00000636964 INHBEP58166 350 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 KLHL30Q0D2K2 578 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 BFSP1Q12934 665 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 NFIL3Q16649 462 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 WDR93Q6P2C0 686 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 TRIM74Q86UV6 250 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 TRIM73Q86UV7 250 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 DNAAF5Q86Y56 855 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 COPS5Q92905 334 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 PCYT2Q99447 389 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 MKNK1Q9BUB5 465 aa12.46□□□□□ -0.42
CLN6-217ENST00000636964 ADSSP30520 456 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 VAV2P52735 878 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 KIF5AQ12840 1032 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 HSP90B2PQ58FF3 399 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 TRIM50Q86XT4 487 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 TIPINQ9BVW5 301 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 ATP6V0A4Q9HBG4 840 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 PDLIM7Q9NR12 457 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 HDAC6Q9UBN7 1215 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 ADAMTS1Q9UHI8 967 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 MAFBQ9Y5Q3 323 aaPredicted RBP12.45□□□□□ -0.42
CLN6-217ENST00000636964 PDHXO00330 501 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 OATP04181 439 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 SERPING1P05155 500 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 CNGA1P29973 690 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 TCF7P36402 384 aaPredicted RBP12.45□□□□□ -0.42
CLN6-217ENST00000636964 GGCXP38435 758 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 MAGEA1P43355 309 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 IRAK1P51617 712 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 ALCAMQ13740 583 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 ASIC2Q16515 512 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 HSDL1Q3SXM5 330 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 AP1ARQ63HQ0 302 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 XXYLT1Q8NBI6 393 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 KIFAP3Q92845 792 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 PDGFCQ9NRA1 345 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 IGSF9BQ9UPX0 1349 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 A0A0G2JMZ2 1700 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 ATG7O95352 703 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 KRT13P13646 458 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 GCLMP48507 274 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 EMC2Q15006 297 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 ASTE1Q2TB18 679 aaPredicted RBP12.45□□□□□ -0.42
CLN6-217ENST00000636964 IQCEQ6IPM2 695 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 CBWD2Q8IUF1 395 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 SLC9A9Q8IVB4 645 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 PLEKHO2Q8TD55 490 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 CCDC127Q96BQ5 260 aa12.45□□□□□ -0.42
CLN6-217ENST00000636964 NAPGQ99747 312 aaPredicted RBP12.45□□□□□ -0.42
CLN6-217ENST00000636964 PLCB1Q9NQ66 1216 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms